PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 195658
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family NF-YA
Protein Properties Length: 217aa    MW: 23294.8 Da    PI: 9.6487
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
195658genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA99.63.3e-3186142158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                +ep+YVNaKQy++Il+RR++Rak+e+e++l +ksrkpylheSRh+hA rR+Rg gGrF
     195658  86 EEPVYVNAKQYHGILRRRAARAKAESENRL-IKSRKPYLHESRHNHARRRERGAGGRF 142
                69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.3E-3484145IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.09485145IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.2E-2787142IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.7E-2388110IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS00686090110IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.7E-23119142IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MQVQAPQGGV VEYATNDGSG AAAQGQDYMR SAYAYDPYMA YGGVVAYGQQ TVVAPHVMGG  60
LQARSISHWS PYDRSARMML PSEMEEEPVY VNAKQYHGIL RRRAARAKAE SENRLIKSRK  120
PYLHESRHNH ARRRERGAGG RFLTKKELEE RDRLAKAKEG GGDGGDAADA DANANANAKE  180
GGGADADAGG DDAGDKETPS KEKDAPAKKT AKKGKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A8e-2286147264HAPB protein
4g92_A8e-2286147264HAPB protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003063636.11e-62predicted protein
SwissprotQ945M92e-31NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBLC1N6Y93e-61C1N6Y9_MICPC; Predicted protein
STRINGXP_003063636.15e-62(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP954144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.17e-13nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]