PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

19643

Common Name

SELMODRAFT_414369

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Dof

Protein Properties

Length: 62aa MW: 7166.93 Da PI: 10.0212

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
19643	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	58.5	1.4e-18	2	61	3	55
zf-Dof 3 ekalkcprCdstntkfCyynnysls....qPryfCkaCrryWtkGGalrnv...PvGggr 55 ++ +cprC+s nt+f yynn + qPry C++C+ Wt+GG +r+v P Gg + 19643 2 DNVYQCPRCQSYNTRFDYYNNEKSTgkrdQPRYACRSCKGKWTQGGKVRDVslsPTGGNK 61 67789**************86533444*******************9555556655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-9	1	62	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.8E-27	2	62	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	15.389	5	62	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 62 aa Download sequence Send to blast
PDNVYQCPRC QSYNTRFDYY NNEKSTGKRD QPRYACRSCK GKWTQGGKVR DVSLSPTGGN 60 KR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024516314.1	7e-38	uncharacterized protein LOC112341077
Refseq	XP_024520303.1	7e-38	uncharacterized protein LOC112342540
TrEMBL	D8RD71	6e-38	D8RD71_SELML; Uncharacterized protein (Fragment)
TrEMBL	D8RSI5	2e-37	D8RSI5_SELML; Uncharacterized protein
TrEMBL	D8STN7	2e-37	D8STN7_SELML; Uncharacterized protein
TrEMBL	D8T550	2e-37	D8T550_SELML; Uncharacterized protein
STRING	EFJ08200	4e-38	(Selaginella moellendorffii)
STRING	EFJ12292	3e-38	(Selaginella moellendorffii)
STRING	EFJ25073	1e-38	(Selaginella moellendorffii)
STRING	EFJ25074	3e-38	(Selaginella moellendorffii)
STRING	EFJ29970	1e-38	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69570.1	1e-13	Dof family protein

Link Out ? help Back to Top
Phytozome	19643
Entrez Gene	9657038

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]