PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

19890

Common Name

SELMODRAFT_19890

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

ERF

Protein Properties

Length: 58aa MW: 6497.48 Da PI: 11.3401

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
19890	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.2	4.9e-19	1	49	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp + r +lg+f tae+Aa a++aa+++++g 19890 1 YRGVRQRP-SGKWAAEIRDP-----HqgVRLWLGSFATAEKAALAYDAAARRIKG 49 9*****.7*****7.....336**********************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	3.4E-28	1	57	IPR001471	AP2/ERF domain
Pfam	PF00847	2.5E-12	1	49	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	8.2E-31	1	57	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.838	1	57	IPR001471	AP2/ERF domain
CDD	cd00018	1.85E-17	1	56	No hit	No description
PRINTS	PR00367	3.0E-9	1	12	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.47E-21	1	57	IPR016177	DNA-binding domain
PRINTS	PR00367	3.0E-9	23	39	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 58 aa Download sequence Send to blast
YRGVRQRPSG KWAAEIRDPH QGVRLWLGSF ATAEKAALAY DAAARRIKGK KAKLNFVD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	4e-20	1	56	3	59	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A	4e-20	1	56	6	62	ATERF1
3gcc_A	4e-20	1	56	6	62	ATERF1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:9159183}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269\|PubMed:18836139, ECO:0000269\|PubMed:9159183}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024539484.1	2e-33	ethylene-responsive transcription factor 5-like
Refseq	XP_024539486.1	2e-33	ethylene-responsive transcription factor 5-like
Refseq	XP_024539487.1	2e-33	ethylene-responsive transcription factor 5-like
Refseq	XP_024539488.1	2e-33	ethylene-responsive transcription factor 5-like
Refseq	XP_024539489.1	2e-33	ethylene-responsive transcription factor 5-like
Refseq	XP_024539490.1	2e-33	ethylene-responsive transcription factor 5-like
Refseq	XP_024539491.1	2e-33	ethylene-responsive transcription factor 5-like
Refseq	XP_024539492.1	2e-33	ethylene-responsive transcription factor 5-like
Refseq	XP_024545514.1	2e-33	ethylene-responsive transcription factor 5-like
Refseq	XP_024545515.1	2e-33	ethylene-responsive transcription factor 5-like
Refseq	XP_024545516.1	2e-33	ethylene-responsive transcription factor 5-like
Refseq	XP_024545517.1	2e-33	ethylene-responsive transcription factor 5-like
Refseq	XP_024545518.1	2e-33	ethylene-responsive transcription factor 5-like
Refseq	XP_024545519.1	2e-33	ethylene-responsive transcription factor 5-like
Refseq	XP_024545520.1	2e-33	ethylene-responsive transcription factor 5-like
Swissprot	P42736	1e-24	RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3
TrEMBL	D8S5W2	1e-33	D8S5W2_SELML; Uncharacterized protein (Fragment)
STRING	EFJ20242	2e-34	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G43160.1	4e-14	related to AP2 6

Link Out ? help Back to Top
Phytozome	19890
Entrez Gene	9653898

Publications ? help Back to Top
Bueso E, et al. The lithium tolerance of the Arabidopsis cat2 mutant reveals a cross-talk between oxidative stress and ethylene. Plant J., 2007. 52(6): p. 1052-65 [PMID:17931347] Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chen YC, et al. Root defense analysis against Fusarium oxysporum reveals new regulators to confer resistance. Sci Rep, 2014. 4: p. 5584 [PMID:24998294] Deslauriers SD,Alvarez AA,Lacey RF,Binder BM,Larsen PB Dominant gain-of-function mutations in transmembrane domain III of ERS1 and ETR1 suggest a novel role for this domain in regulating the magnitude of ethylene response in Arabidopsis. New Phytol., 2015. 208(2): p. 442-55 [PMID:25988998] Bui LT,Giuntoli B,Kosmacz M,Parlanti S,Licausi F Constitutively expressed ERF-VII transcription factors redundantly activate the core anaerobic response in Arabidopsis thaliana. Plant Sci., 2015. 236: p. 37-43 [PMID:26025519] Gasch P, et al. Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis. Plant Cell, 2016. 28(1): p. 160-80 [PMID:26668304] Liu W, et al. Ethylene response factor AtERF72 negatively regulates Arabidopsis thaliana response to iron deficiency. Biochem. Biophys. Res. Commun., 2017. 491(3): p. 862-868 [PMID:28390898] Yao Y,Chen X,Wu AM ERF-VII members exhibit synergistic and separate roles in Arabidopsis. Plant Signal Behav, 2017. 12(6): p. e1329073 [PMID:28537474]