PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 199928
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family C3H
Protein Properties Length: 267aa    MW: 28467.3 Da    PI: 10.4722
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
199928genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.3e-07153173526
              --SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
              +Cr+f+r G C +G+ C+F+Hg
   199928 153 ICRDFQR-GNCTRGPGCRFSHG 173
              6******.*************9 PP
2zf-CCCH20.21e-06195215526
              --SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
              +C +f++ G C +Gd+C+F+Hg
   199928 195 ECFDFQK-GRCTRGDSCRFSHG 215
              577899*.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF502493.92E-1573137IPR012340Nucleic acid-binding, OB-fold
SMARTSM003578.0E-1076139IPR011129Cold shock protein
Gene3DG3DSA:2.40.50.1401.6E-1577137IPR012340Nucleic acid-binding, OB-fold
CDDcd044582.67E-1582138No hitNo description
PfamPF003132.0E-1484138IPR002059Cold-shock protein, DNA-binding
PROSITE patternPS00352087106IPR019844Cold-shock conserved site
PROSITE profilePS5010315.995148175IPR000571Zinc finger, CCCH-type
SMARTSM003560.0021149174IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5149173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-6153175IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4153173IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.408190217IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-4192216IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-4195215IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4196215IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MGSPSRSRSP PNRSRSRSPA KDSPTRGGGG SPPPARDRSR SRSRSRGRSR SRSRSPPRGG  60
DRSRSPPRGG SGARKSGIAG RWNDRGFGFI TPDGGGEDVF CHFSAIKDGN MLSEGSRVDY  120
DESFDDRKGK PRAENVTGGI QGNDRGPPRE AGICRDFQRG NCTRGPGCRF SHGDDRGGGG  180
GYGGGGYGGG GRSNECFDFQ KGRCTRGDSC RFSHGGGGGG GGGGGGYGGG YDRDRYDDRD  240
RDRYDDRRGG DRYDSYDRYD RSYDRG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14353RSRGRSRSRSR
24553RGRSRSRSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003064131.15e-93highly cold-shock DNA binding protein
TrEMBLC1N7Q01e-91C1N7Q0_MICPC; Highly cold-shock DNA binding protein
STRINGXP_003064131.12e-92(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1509222