PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 203219
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family MYB_related
Protein Properties Length: 495aa    MW: 54950.9 Da    PI: 10.0596
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
203219genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.52e-10398438345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +WT  + el+ +a++q+G++ +++I r ++  R++ q+k++++
           203219 398 KWTHADTELFFNAIQQFGTD-FSLIQRLFP-SRSRRQIKNKYL 438
                      8*******************.*********.**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159631.7E-24390467No hitNo description
PROSITE profilePS5129310.569394445IPR017884SANT domain
Gene3DG3DSA:1.10.10.602.7E-7395438IPR009057Homeodomain-like
SMARTSM007176.9E-9395443IPR001005SANT/Myb domain
SuperFamilySSF466892.09E-10397441IPR009057Homeodomain-like
CDDcd001671.22E-7398439No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MDSSALDSLE SDEKRHLGKQ RSSSFAPKLS QRTRARLVGN PLNVDLNTVG QDDRLKDLSV  60
IVDTDERGLR TRNEYAIHKK RALPFMKIQS DEHVQSSQLA ATGLIDEHYR SGWTAPTQSN  120
DVIIPGSQQS NVEICLSHEN RGELTAVCSQ GNGYEMCSEN IRMPAPLVST EVCHGLVRPP  180
TSGLKSSKNG CAKMDTGKDN LTKSQVPTIH NRVAQAESLP PAHRWVRSAG TARGIRTKTP  240
FRKGIPPSAS ISSANDKIAC SIREIIQKRT REERATEAKT RLSKRKCLES NSSLHKSLQG  300
NTKQLNVDRP HFTRKEDSRS IPTRSNNISS VAAQFVTGHV NMTPQVLVVD GQIVINENSL  360
TVNAAVERTT TISDFTRVEE SATKLNSATY ASYTKAEKWT HADTELFFNA IQQFGTDFSL  420
IQRLFPSRSR RQIKNKYLTE DRLNPRRVEA AIKNLQPDPA LYQNLISVLQ KPVGCPEIAG  480
VEWARAVFDK KENA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5n9g_C3e-1534246623150Transcription factor TFIIIB component B'' homolog
5n9g_H3e-1534246623150Transcription factor TFIIIB component B'' homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003056068.10.0predicted protein
TrEMBLC1MKW60.0C1MKW6_MICPC; Predicted protein
STRINGXP_003056068.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP377099
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.24e-16MYB_related family protein