PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 205282
Common NameMICPUCDRAFT_59323
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family C3H
Protein Properties Length: 308aa    MW: 31850.3 Da    PI: 6.6345
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
205282genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.81.4e-06125147426
              ---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
              ++C++f     C++Gd+C F H+
   205282 125 VRCQTFNTKAGCRFGDKCAFKHV 147
              68******99************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.7796123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-698121IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-498122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-5100123IPR000571Zinc finger, CCCH-type
SMARTSM003561.2123148IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-4125147IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.577126149IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-4127147IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MPYTGALAGW AASAPPPTSM GLGLGLGLGM MHTPPPMFNG GGGGGGGGGR GGASVPMHPS  60
ALRYAAHAMT TGKMDVGHVN KRRRVGSRHA PIPLDDNALK PCLFWRNGQC KNGDDCGYLH  120
GDSPVRCQTF NTKAGCRFGD KCAFKHVRGP LVVDEVTDRD DVDGDADGNG GANPNPNPNP  180
FATHASNCGC DSCHPPPPVK VRYVARGGGG RGDRGDDGSD SEDGEILEVV EDQGLEDGSH  240
VVGERTLSAE EVAARDETLT KCSGAVSCGE TTRHWAEFLS GGVGGAHKGR PSNGLVPFWK  300
KDNERGN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18084KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003059725.10.0predicted protein
TrEMBLC1MX110.0C1MX11_MICPC; Predicted protein
STRINGXP_003059725.10.0(Micromonas pusilla)
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]