PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

20533

Common Name

MICPUCDRAFT_20533

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

Protein Properties

Length: 148aa MW: 16591 Da PI: 10.3942

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
20533	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.2e-05	23	46	3	23
ET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirt.H 23 C+ Cgk F +L +H r+ H 20533 23 CEhpGCGKEFAWAQDLAKHVRRaH 46 77779****************999 PP
2	zf-C2H2	16	3.3e-05	53	77	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ C k+F + +L+ H rtH 20533 53 FQCShdGCEKRFYERKLLVAHERTH 77 89**********************9 PP
3	zf-C2H2	16.3	2.7e-05	83	108	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + C Cgk+F+ + +L+ H + H 20533 83 FACAhpGCGKTFRARNSLTYHVKAmH 108 668888***************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	13.36	21	51	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0091	21	46	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	4.8E-9	22	47	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	23	46	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.79E-8	25	77	No hit	No description
PROSITE profile	PS50157	14.17	53	82	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	4.3E-10	53	76	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0084	53	77	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	55	77	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	9.32E-15	64	123	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.4E-13	77	105	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.926	83	113	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0017	83	108	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	85	108	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.81	114	138	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MGAATRPLGA PPPSKPPRGK VACEHPGCGK EFAWAQDLAK HVRRAHSGEA PKFQCSHDGC 60 EKRFYERKLL VAHERTHTDE RPFACAHPGC GKTFRARNSL TYHVKAMHSR AETLRCDVDG 120 CAFTTKKPEL LASHRAKHAR RVTERAWK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003061688.1	1e-105	predicted protein, partial
TrEMBL	C1N0S1	1e-104	C1N0S1_MICPC; Predicted protein (Fragment)
STRING	XP_003061688.1	1e-104	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP10650	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	3e-16	C2H2 family protein

Link Out ? help Back to Top
Phytozome	20533
Entrez Gene	9686880

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]