PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

227538

Common Name

SELMODRAFT_227538, SELMODRAFT_229209

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

NF-YB

Protein Properties

Length: 146aa MW: 15998 Da PI: 4.6853

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
227538	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	76.8	3.1e-24	8	97	3	92
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 ++d lP a +++i+k++lP + ++++da++++ +c +efi +++se+++ c++e+++ti+++ +l al lGf +y+e++++ +++r+ 227538 8 KEDVSLPKATMTKIIKEMLPPEVRVARDAQDLLVDCCVEFINLISSESNEICNKEEKRTIAPEHVLKALEILGFGEYIEEVHAAYEQHRN 97 67999****************************************************************************998888886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	7.8E-40	5	142	IPR009072	Histone-fold
SuperFamily	SSF47113	5.0E-35	9	139	IPR009072	Histone-fold
Pfam	PF00808	8.0E-22	12	76	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MDAASRSKED VSLPKATMTK IIKEMLPPEV RVARDAQDLL VDCCVEFINL ISSESNEICN 60 KEEKRTIAPE HVLKALEILG FGEYIEEVHA AYEQHRNETL DSPKAGGKWG KEAGSGMTEE 120 EAIAAQQRMF AEARARMNSG GTQSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	6e-39	1	134	4	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002965285.2	1e-104	protein Dr1 homolog
Refseq	XP_024516159.1	1e-104	protein Dr1 homolog
Swissprot	P49592	1e-75	NC2B_ARATH; Protein Dr1 homolog
TrEMBL	D8R2T0	1e-103	D8R2T0_SELML; Uncharacterized protein
STRING	EFJ12470	1e-104	(Selaginella moellendorffii)
STRING	EFJ34123	1e-104	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP3449	17	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.2	5e-78	nuclear factor Y, subunit B13

Link Out ? help Back to Top
Phytozome	227538
Entrez Gene	9659855 \| 9660490

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]