PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

231344

Common Name

SELMODRAFT_231344, TGA_g2

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

bZIP

Protein Properties

Length: 319aa MW: 35563.1 Da PI: 8.6533

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
231344	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.9	2.8e-10	34	73	4	43
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 +k rr+++NReAAr+sR+RKka++++Le +L + + 231344 34 SKTLRRLAQNREAARKSRLRKKAYVQQLESSRVKLNQLEQ 73 6889*************************86555544444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.3E-8	30	77	No hit	No description
SMART	SM00338	6.3E-6	31	94	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.255	33	77	IPR004827	Basic-leucine zipper domain
CDD	cd14708	1.04E-21	35	87	No hit	No description
Pfam	PF00170	3.1E-7	35	74	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.14E-8	35	78	No hit	No description
PROSITE pattern	PS00036	0	38	53	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	6.3E-35	118	193	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009410	Biological Process	response to xenobiotic stimulus
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MADSSPQKGN STDDGDQKSE DGPLTPSSTK NLDSKTLRRL AQNREAARKS RLRKKAYVQQ 60 LESSRVKLNQ LEQELQRARQ QGFYLGGYSN DQSHAAASSG AAAFDMEYGR WLEEQQRQMT 120 ELRTSLQAHV SDDELRVLVD AAMSHYDEIF RLKTAAAKSD VFHLVSGMWK TPAERCFMWM 180 GGFRPSELLK ILIPQLEPLT EQQLMGICNL QQSSQQAEDA LSQGMEALQQ SLADTLATGS 240 LGAASNVANY MGQMAMAMGK LGTLENFVRQ ADNLRHQTLQ QMHRILTTRQ AARAFLAIGD 300 YFGRLRALSS LWAARPRE*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00492	DAP	Transfer from AT5G06950	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024531444.1	0.0	transcription factor TGA2.3
Refseq	XP_024531445.1	0.0	transcription factor TGA2.3
Swissprot	Q41558	1e-161	HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBL	D8REU4	0.0	D8REU4_SELML; Uncharacterized protein TGA_g2
STRING	EFJ29724	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP722	16	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06950.4	1e-139	bZIP family protein

Link Out ? help Back to Top
Phytozome	231344
Entrez Gene	9646693

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]