PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 235487
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family MIKC_MADS
Protein Properties Length: 218aa    MW: 24850.2 Da    PI: 5.5377
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
235487genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.28.2e-27959151
            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
            krien + rqvtfskRr g+lKKA EL +LCdae +viifsstgkl+ey+s
  235487  9 KRIENATTRQVTFSKRRGGLLKKARELAILCDAELSVIIFSSTGKLFEYAS 59
            79***********************************************86 PP
2K-box63.38.9e-22861671387
   K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK.......nellleqieelqkkekel 87 
             ++ +++qe+a+Lk++ie+L++++Rh++Ge+L+sL++keLq+Le+  e++ ++iR++K       + ll+e++eel++k +++
  235487  86 DNDYWNQEVARLKQKIEQLENTKRHMMGEELTSLTVKELQELERMAENGYNEIRARKltlmnlqESLLMEELEELRRKVEAA 167
             5789****************************************************93333333345677788888887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.0E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.057161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-33277IPR002100Transcription factor, MADS-box
CDDcd002652.39E-44274No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-29323IPR002100Transcription factor, MADS-box
PfamPF003198.1E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-293859IPR002100Transcription factor, MADS-box
PfamPF014868.1E-2186166IPR002487Transcription factor, K-box
PROSITE profilePS5129712.72187170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010440Biological Processstomatal lineage progression
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MGRGKIEIKR IENATTRQVT FSKRRGGLLK KARELAILCD AELSVIIFSS TGKLFEYASS  60
SMKDILERYS KCPERNPSSP LDVDLDNDYW NQEVARLKQK IEQLENTKRH MMGEELTSLT  120
VKELQELERM AENGYNEIRA RKLTLMNLQE SLLMEELEEL RRKVEAAEGI GSHTLRSFTV  180
LTEARSPSET REPTTITPGA QAQDNLRDES DTSLQLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-23178178MEF2C
5f28_B7e-23178178MEF2C
5f28_C7e-23178178MEF2C
5f28_D7e-23178178MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00410DAPTransfer from AT3G57230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024517802.11e-142MADS-box transcription factor 23 isoform X1
SwissprotQ9XGJ42e-51GGM13_GNEGN; MADS-box protein GGM13
TrEMBLD8SY561e-138D8SY56_SELML; MADS-domain transcription factor
STRINGEFJ107341e-139(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.13e-49MIKC_MADS family protein
Publications ? help Back to Top
  1. Winter KU, et al.
    MADS-box genes reveal that gnetophytes are more closely related to conifers than to flowering plants.
    Proc. Natl. Acad. Sci. U.S.A., 1999. 96(13): p. 7342-7
    [PMID:10377416]