PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 24407
Common NameSELMODRAFT_24407, WRKY_22
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family WRKY
Protein Properties Length: 259aa    MW: 28690.6 Da    PI: 8.4484
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
24407genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.72.1e-32561259
           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
   WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
           +Dg+nWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers  d++v+ei+Y+geH h 
  24407  5 EDGFNWRKYGQKQVKGSEFPRSYYKCTHPSCPVKKKVERSY-DGQVTEIVYKGEHCHA 61
           7****************************************.**************97 PP
2WRKY102.23e-32173231159
            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
            ldDgy+WrKYGqK+vkg+++pr YY+C+s+gC v+k+ver+++dpk v++tYeg+Hnh+
  24407 173 LDDGYRWRKYGQKVVKGNPHPRYYYKCSSSGCAVRKHVERASNDPKSVITTYEGKHNHD 231
            59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.481163IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-27263IPR003657WRKY domain
SuperFamilySSF1182903.27E-25363IPR003657WRKY domain
SMARTSM007741.2E-35462IPR003657WRKY domain
PfamPF031063.2E-25560IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-37158233IPR003657WRKY domain
SuperFamilySSF1182901.26E-29165233IPR003657WRKY domain
PROSITE profilePS5081137.792168233IPR003657WRKY domain
SMARTSM007745.8E-36173232IPR003657WRKY domain
PfamPF031068.6E-26174231IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
ERPSEDGFNW RKYGQKQVKG SEFPRSYYKC THPSCPVKKK VERSYDGQVT EIVYKGEHCH  60
AKPQLSRRSA CSIYNNSVSA MSSTAGAAVI PDDAAGEDQP RSGATPPPVA AGYEHLSPCS  120
SLDDEKFGED VYDDEESESK KRRMDGSNQV TAIQRTIREP RVVVQTLSEI DILDDGYRWR  180
KYGQKVVKGN PHPRYYYKCS SSGCAVRKHV ERASNDPKSV ITTYEGKHNH DVPAPKHAAA  240
ANNISANNSS TTTTNNGSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-395234878Probable WRKY transcription factor 4
2lex_A5e-395234878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024524483.10.0probable WRKY transcription factor 4
SwissprotQ6B6R47e-90WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLD8QZG40.0D8QZG4_SELML; Uncharacterized protein WRKY_22 (Fragment)
STRINGEFJ347970.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-88WRKY family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  2. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]