PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

24518

Common Name

SELMODRAFT_14382, SELMODRAFT_24518

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Trihelix

Protein Properties

Length: 213aa MW: 25582.2 Da PI: 10.0118

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
24518	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93.4	2.2e-29	126	208	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++ ev+aLi++r me+++++ k+p Wee+s+ ++ +g++rs+k+Ckekwen+nk+y+k+ + ++ e+++tcpyf++l+ 24518 126 RWPRAEVQALIQLRAAMETKFQEVGPKGPFWEEISAGLACQGYSRSAKRCKEKWENINKYYRKTSTKKRP---ENTKTCPYFQELD 208 8*************************************************************998885...78899****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	6.1E-4	123	185	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.4E-5	124	182	IPR009057	Homeodomain-like
Pfam	PF13837	4.0E-21	125	209	No hit	No description
CDD	cd12203	1.57E-24	125	189	No hit	No description
PROSITE profile	PS50090	7.143	126	183	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
KKRKRKSWKE RMAFFENLVK KFMEKQEQMQ QNFLELLEKR EQERMKRDET WRKQEVARLN 60 REYELRVEEH TRRINYDTAL ASALQKATGQ VLEMPHQGPV PSPYSNTLAE SNDDHHKEVC 120 DSMNKRWPRA EVQALIQLRA AMETKFQEVG PKGPFWEEIS AGLACQGYSR SAKRCKEKWE 180 NINKYYRKTS TKKRPENTKT CPYFQELDVL YQK

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00244	DAP	Transfer from AT1G76890	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024527162.1	1e-155	trihelix transcription factor GT-2-like
Refseq	XP_024527164.1	1e-155	trihelix transcription factor GT-2-like
TrEMBL	D8R5N9	1e-157	D8R5N9_SELML; Uncharacterized protein (Fragment)
STRING	EFJ16698	1e-158	(Selaginella moellendorffii)
STRING	EFJ32515	1e-158	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP663	15	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	3e-50	Trihelix family protein

Link Out ? help Back to Top
Phytozome	24518
Entrez Gene	9635577 \| 9652283

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]