PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

24522

Organism

Ostreococcus lucimarinus

Taxonomic ID

242159

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

C3H

Protein Properties

Length: 466aa MW: 46209.5 Da PI: 9.0167

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
24522	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.2	1.2e-07	91	108	8	26
GGGGTS--TTTTT-SS-SS CS zf-CCCH 8 ffartGtCkyGdrCkFaHg 26 ++a+ GtCk+Gd+C+F+H+ 24522 91 DHAK-GTCKRGDQCRFSHD 108 6788.*************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.76	37	62	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	10.596	37	63	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.014	83	110	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.001	85	109	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.1E-5	89	108	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence Send to blast
MTPEAQRAAR ERAKRALEMG RMSPTSGTGG LARNGSFERS DACFDWSRGS CARADCRFSH 60 EGEAGGNPAA GGVMGRGVGS PHRAAAGVCF DHAKGTCKRG DQCRFSHDVA AVAAFAKIAS 120 ASGSPTGSPT NGRVGGVSIP KPLPIAGGLN AVARPVTMAK EPTPAPIAQR SGAIDYASAA 180 KAGVTVATEG SFAAALVGRK ASLDPPLPTA PMPAVAALEK SPTLTTSGAS VPTPRFPTPN 240 GASAAPVAGA NGAKPAVMGG PTFQFGTGSM LASDQAADDS PNAISFGNAS SPKTYPKYPK 300 PEFAFGAGAE APSRMPNVGE GFVPPVPAGP PPEANQRAQP VAPGFGFSQP GGFGVATPEK 360 SAPHANAWDR NARPNGGVAA ADGSSQLGAA WGVSGMGMEG LAEDVYSNVG AYDALGGRSP 420 FGVGLGYSLF SPAAAPQPES VGQQAQGQPQ SMWGGATGFG GSFGF*

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence Send to blast

MTPEAQRAAR ERAKRALEMG RMSPTSGTGG LARNGSFERS DACFDWSRGS CARADCRFSH  60
EGEAGGNPAA GGVMGRGVGS PHRAAAGVCF DHAKGTCKRG DQCRFSHDVA AVAAFAKIAS  120
ASGSPTGSPT NGRVGGVSIP KPLPIAGGLN AVARPVTMAK EPTPAPIAQR SGAIDYASAA  180
KAGVTVATEG SFAAALVGRK ASLDPPLPTA PMPAVAALEK SPTLTTSGAS VPTPRFPTPN  240
GASAAPVAGA NGAKPAVMGG PTFQFGTGSM LASDQAADDS PNAISFGNAS SPKTYPKYPK  300
PEFAFGAGAE APSRMPNVGE GFVPPVPAGP PPEANQRAQP VAPGFGFSQP GGFGVATPEK  360
SAPHANAWDR NARPNGGVAA ADGSSQLGAA WGVSGMGMEG LAEDVYSNVG AYDALGGRSP  420
FGVGLGYSLF SPAAAPQPES VGQQAQGQPQ SMWGGATGFG GSFGF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP000585	0.0	CP000585.1 Ostreococcus lucimarinus CCE9901 chromosome 5, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001417952.1	0.0	predicted protein
TrEMBL	A4RX82	0.0	A4RX82_OSTLU; Uncharacterized protein
STRING	ABO96245	0.0	(Ostreococcus 'lucimarinus')

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP13040	3	3

Link Out ? help Back to Top
Phytozome	24522