PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

25564

Common Name

SELMODRAFT_25564

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

HSF

Protein Properties

Length: 178aa MW: 20787.3 Da PI: 7.6039

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
25564	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	117.7	6.7e-37	9	100	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k++++++d+++++++swse+g++fvv+ + efak++Lp+yFkh+nf+SFvRQLn+YgF+k+ +++ weF++++F+kg+++ll++i+ 25564 9 FLTKTFHLVDDSSTDDVVSWSEDGTTFVVWRPPEFAKDILPNYFKHNNFSSFVRQLNTYGFRKIVSDR---------WEFANEYFRKGQQDLLCEIH 96 9**************************************************************999.........**************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k+ 25564 97 RRKT 100 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	9.1E-39	3	93	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	2.6E-60	5	98	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	3.1E-35	6	98	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	3.0E-33	9	98	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.8E-21	9	32	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.8E-21	47	59	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	48	72	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.8E-21	60	72	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
SHRSVPAPFL TKTFHLVDDS STDDVVSWSE DGTTFVVWRP PEFAKDILPN YFKHNNFSSF 60 VRQLNTYGFR KIVSDRWEFA NEYFRKGQQD LLCEIHRRKT GQPNTMQPIR QTSTAEDILW 120 SHVTTTSPVP SPRAPHFTAA VSICDENERL RRDNCILMSE LSRLRRLNDE VLLFVQNQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hdk_A	7e-26	5	98	7	110	Heat shock factor protein 2
5hdk_B	7e-26	5	98	7	110	Heat shock factor protein 2
5hdk_C	7e-26	5	98	7	110	Heat shock factor protein 2
5hdk_D	7e-26	5	98	7	110	Heat shock factor protein 2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002965510.2	1e-130	heat stress transcription factor B-4
Swissprot	Q9C635	1e-67	HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBL	D8R3E2	1e-130	D8R3E2_SELML; Uncharacterized protein (Fragment)
STRING	EFJ32930	1e-131	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP96	17	233

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46264.1	3e-60	heat shock transcription factor B4

Link Out ? help Back to Top
Phytozome	25564
Entrez Gene	9635652

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]