PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

25673

Common Name

SELMODRAFT_15487, SELMODRAFT_25673

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

NAC

Protein Properties

Length: 161aa MW: 18820.8 Da PI: 10.3322

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
25673	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.7	9.2e-53	3	129	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkk 104 pGfrFhPtdeelv +yL++kv++k+l++ evi+++diyk++PwdLp+++ ++e+ wyfF+ rd+ky++++r+nr+tk g+Wkatg d++++++ +++ +glkk 25673 3 LPGFRFHPTDEELVGFYLHRKVQHKTLPF-EVITQLDIYKYDPWDLPHMAVSGENVWYFFCLRDQKYRNSTRPNRVTKGGFWKATGPDRAIYTSdGSKCIGLKK 105 69*************************.99***********77778899*********************************9966677* PP NAM 105 tLvfykgrapkgektdWvmheyrl 128 +Lvfykg+a kg+ktdWvmhe+rl 25673 106 SLVFYKGKAAKGTKTDWVMHEFRL 129 ********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	54.867	2	158	IPR003441	NAC domain
SuperFamily	SSF101941	4.45E-58	3	158	IPR003441	NAC domain
Pfam	PF02365	5.5E-27	4	129	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
VILPGFRFHP TDEELVGFYL HRKVQHKTLP FEVITQLDIY KYDPWDLPHM AVSGENVWYF 60 FCLRDQKYRN STRPNRVTKG GFWKATGPDR AIYTSDGSKC IGLKKSLVFY KGKAAKGTKT 120 DWVMHEFRLP VLGSTKDPSK KRPPVFEESW AVCRIFKKRS M

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-51	4	160	19	167	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-51	4	160	19	167	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-51	4	160	19	167	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-51	4	160	19	167	NO APICAL MERISTEM PROTEIN
3swm_A	1e-51	4	160	22	170	NAC domain-containing protein 19
3swm_B	1e-51	4	160	22	170	NAC domain-containing protein 19
3swm_C	1e-51	4	160	22	170	NAC domain-containing protein 19
3swm_D	1e-51	4	160	22	170	NAC domain-containing protein 19
3swp_A	1e-51	4	160	22	170	NAC domain-containing protein 19
3swp_B	1e-51	4	160	22	170	NAC domain-containing protein 19
3swp_C	1e-51	4	160	22	170	NAC domain-containing protein 19
3swp_D	1e-51	4	160	22	170	NAC domain-containing protein 19
4dul_A	1e-51	4	160	19	167	NAC domain-containing protein 19
4dul_B	1e-51	4	160	19	167	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00537	DAP	Transfer from AT5G39820	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024530735.1	1e-119	protein FEZ isoform X2
Refseq	XP_024544176.1	1e-119	protein FEZ isoform X2
Swissprot	Q9FIW5	4e-78	NAC94_ARATH; Putative NAC domain-containing protein 94
TrEMBL	D8QP82	1e-117	D8QP82_SELML; Uncharacterized protein (Fragment)
STRING	EFJ15558	1e-118	(Selaginella moellendorffii)
STRING	EFJ38886	1e-118	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39820.1	2e-80	NAC domain containing protein 94

Link Out ? help Back to Top
Phytozome	25673
Entrez Gene	9643153 \| 9654477

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]