PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 26580
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family WRKY
Protein Properties Length: 245aa    MW: 26474.8 Da    PI: 9.791
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
26580genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.21.5e-2745105259
            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEE..E-SSSTTE.EEEEEES--SS- CS
   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkve..rsaedpkv.veitYegeHnhe 59 
             Dgy+WrKYGqK++kgs fprsYYrCt +gCp++kk e  r++ed+++ +++ YegeH+h 
  26580  45 ADGYRWRKYGQKNIKGSSFPRSYYRCTERGCPARKKTElrRASEDGEMeTVVCYEGEHTHA 105
            7**********************************976558999999945678*******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.5E-2733107IPR003657WRKY domain
PROSITE profilePS5081123.30739107IPR003657WRKY domain
SuperFamilySSF1182903.53E-2341107IPR003657WRKY domain
SMARTSM007743.6E-2944106IPR003657WRKY domain
PfamPF031063.0E-2446104IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:1900150Biological Processregulation of defense response to fungus
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MATTTTHGTR VYDDDAGDRP RRSYPHSTSR STTTVAAHAP SSAHADGYRW RKYGQKNIKG  60
SSFPRSYYRC TERGCPARKK TELRRASEDG EMETVVCYEG EHTHAKPSGG GGRAETLAPG  120
STKSFGTRAS GDSTATNARR GTTRFHDVCG GGGGGGKSSS GQATESDAED SAASEEDSTR  180
TAVEHDETEA LGVRKIAKWS SITDDVQRIR TVRARAPRIL VQRRRGEEAE TRRESAEPVV  240
RRHG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-19461091676WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005910.0CP000591.1 Ostreococcus lucimarinus CCE9901 chromosome 11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001420519.11e-175predicted protein
TrEMBLA4S4Z21e-174A4S4Z2_OSTLU; Uncharacterized protein
STRINGABO988121e-174(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4691626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.11e-19WRKY DNA-binding protein 58