PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 26956
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C2H2
Protein Properties Length: 130aa    MW: 14535.3 Da    PI: 6.2349
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
26956genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000192445223
             EETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
             +Cp+Cg   +r   + +H+r +
    26956 24 VCPHCGFIGKRAAGFANHLRAC 45
             8******************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MKKLKTLSAN QPLASTHKKS QSLVCPHCGF IGKRAAGFAN HLRACRRRHE DEPTPTPSPD  60
EAASEQHERR EEQQEQEEAR ARHANTIDIL EDTIDILEDT RRLAGDQITL SLPIIVLSPE  120
CRMTESPEC*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005920.0CP000592.1 Ostreococcus lucimarinus CCE9901 chromosome 12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001420864.12e-90predicted protein
TrEMBLA4S6165e-89A4S616_OSTLU; Uncharacterized protein
STRINGABO991578e-90(Ostreococcus 'lucimarinus')