PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 270282
Common NameSELMODRAFT_270282, SELMODRAFT_439017
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family bZIP
Protein Properties Length: 356aa    MW: 38866.7 Da    PI: 6.686
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
270282genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_150.83.6e-16186238355
             XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
             + kr rr+ +NRe+ArrsR+RK+a +  Le  v++L  eN++L k+l+ ++k+
  270282 186 DMKRMRRMLSNRESARRSRRRKQAHMSDLEMQVAQLRVENSTLLKQLNDINKK 238
             68*********************************************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.4E-13180239No hitNo description
SMARTSM003382.4E-18184248IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.645186238IPR004827Basic-leucine zipper domain
PfamPF001702.5E-15187238IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.83E-12188237No hitNo description
PROSITE patternPS000360191206IPR004827Basic-leucine zipper domain
PfamPF124986.9E-8297343IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MAPPPPAQAR GMNRSDSEWA FQEFLREHDD AIQEEGDGAR SASIPGAPQQ ASAAGGAGIG  60
SRLAPVTEES GVEEVEDRQL DPLFSRLSSS ESKFGQLDPE AYQDYLKKRL ELACAAVALT  120
RASNRKGSND SSSKNATVAG GIPALPPKPE YKDKPSATSG SSREHSDDEE GDADHSTVEQ  180
STEPSDMKRM RRMLSNRESA RRSRRRKQAH MSDLEMQVAQ LRVENSTLLK QLNDINKKFG  240
DAAVDNRVLK SDVEALRAKV KMAENVVSRA GSNGSMNFCN RPHQQKSPAF QIIDEEDHAH  300
HQDHQSPQQE NSGSGGGGSK MNRTPSMQRV ASLEHLQKRI RGPPCNNTNT NSERD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200207RRSRRRKQ
2202207SRRRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002962194.20.0light-inducible protein CPRF2
RefseqXP_002965107.20.0light-inducible protein CPRF2
TrEMBLD8QSK70.0D8QSK7_SELML; Uncharacterized protein
STRINGEFJ339450.0(Selaginella moellendorffii)
STRINGEFJ374540.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18391639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.12e-44bZIP family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]