PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27049
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB_related
Protein Properties Length: 189aa    MW: 20739.7 Da    PI: 4.6891
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27049genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.52.2e-11757348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48
                     +WT  E++ l d+v+++G+g W+tI +          R+  ++k++w++ +
            27049  7 KWTRAEEDALRDGVRKHGPGKWRTIQKDPElgdilRARSNVDLKDKWRNMR 57
                     8**************************99999***99***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.258161IPR017930Myb domain
SuperFamilySSF466895.83E-14458IPR009057Homeodomain-like
SMARTSM007174.7E-5459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-13556IPR009057Homeodomain-like
CDDcd116606.39E-18757No hitNo description
PfamPF002493.9E-8756IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000785Cellular Componentchromatin
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MATAKYKWTR AEEDALRDGV RKHGPGKWRT IQKDPELGDI LRARSNVDLK DKWRNMRESG  60
ALDAADATGG AEEEREASDR EHAEGGGKRR RRDGDEAETS NAKGKENAMD AVTNALFNET  120
QRVKREASAA EAEASAAEAH AARCEREAWE AEKLARELID EAQRQKVGIP VEGTVDVADV  180
AADLLEEE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005930.0CP000593.1 Ostreococcus lucimarinus CCE9901 chromosome 13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001420911.11e-129predicted protein
TrEMBLA4S6A71e-128A4S6A7_OSTLU; Uncharacterized protein
STRINGABO992041e-129(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3956912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-22telomere repeat binding factor 1