PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27102
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family WOX
Protein Properties Length: 207aa    MW: 22827.4 Da    PI: 10.2894
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27102genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox512.4e-16118179157
               TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
  Homeobox   1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
               r +R++ t++q ++Le+lF   ++ p +++ +e++k+l     ++e +V++WFqNrR +ekk
     27102 118 RGPRWSGTPDQYKILEDLFLAgEQPPVRARLTEITKRLqehgPIQEHNVYNWFQNRRSREKK 179
               569*****************98999*************99999******************8 PP
2Wus_type_Homeobox76.73.3e-25120180464
  Wus_type_Homeobox   4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        +RW+ tp+Q kiLe+l+ +G + P ++++++it++L+e+G i+++NV++WFQNr++Re+++
              27102 120 PRWSGTPDQYKILEDLFLAGEQPPVRARLTEITKRLQEHGPIQEHNVYNWFQNRRSREKKR 180
                        7**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.19E-15112181IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.9E-12113184IPR009057Homeodomain-like
PROSITE profilePS5007112.957115180IPR001356Homeobox domain
SMARTSM003891.1E-6117184IPR001356Homeobox domain
CDDcd000869.80E-7118180No hitNo description
PfamPF000468.1E-14118179IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0051301Biological Processcell division
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MPHNAATVTR PGEGKAPPRG AAVHMTERQL YAFRQQIAAY AHICQQLLQI TTVSATQQTP  60
RQREARYEVP GSAGAHAGAN ASAQAFAAMA ASGTANAQQR KTYEEGQRVG RGEDKGVRGP  120
RWSGTPDQYK ILEDLFLAGE QPPVRARLTE ITKRLQEHGP IQEHNVYNWF QNRRSREKKR  180
LAEERASNDA ALDNQPLASR YGVGER*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00669PBMTransfer from GRMZM2G038252Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005930.0CP000593.1 Ostreococcus lucimarinus CCE9901 chromosome 13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001420936.11e-151predicted protein
TrEMBLA4S6F91e-149A4S6F9_OSTLU; Uncharacterized protein
STRINGABO992291e-150(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP644567
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20700.12e-18WUSCHEL related homeobox 14