PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

271535

Common Name

SELMODRAFT_271535

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

DBB

Protein Properties

Length: 286aa MW: 30613.5 Da PI: 4.8209

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
271535	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.8	3.8e-07	4	46	5	41
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ +e+ e+ l C ++ lC+ C e H H++ p 271535 4 QCDVCEKAEAALVCCADEAALCAACDAEVHAAnklagkHQRLP 46 6*****************************6678888888877 PP
2	zf-B_box	29	2.3e-09	54	89	4	37
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg..H 37 ++C+ ++ek +fC +++ llC+ C +++H++ H 271535 54 PICDICQEKTGWFFCVEDRALLCRACDVSIHSSnaH 89 79*****************************76774 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.168	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	5.77E-8	3	47	No hit	No description
Pfam	PF00643	3.6E-5	4	47	IPR000315	B-box-type zinc finger
SMART	SM00336	4.4E-9	4	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	8.845	51	98	IPR000315	B-box-type zinc finger
SMART	SM00336	6.2E-12	51	98	IPR000315	B-box-type zinc finger
CDD	cd00021	1.20E-8	54	98	No hit	No description
Pfam	PF00643	3.5E-7	54	89	IPR000315	B-box-type zinc finger

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009641	Biological Process	shade avoidance
GO:0009658	Biological Process	chloroplast organization
GO:0009718	Biological Process	anthocyanin-containing compound biosynthetic process
GO:0010100	Biological Process	negative regulation of photomorphogenesis
GO:0015995	Biological Process	chlorophyll biosynthetic process
GO:0016607	Cellular Component	nuclear speck
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MRIQCDVCEK AEAALVCCAD EAALCAACDA EVHAANKLAG KHQRLPLSFS GTSPICDICQ 60 EKTGWFFCVE DRALLCRACD VSIHSSNAHA SSHNRFLVTG VRVALSALSA QDFLEVPPVT 120 PQQPRKNASA SGASSSGNSL SANGTPERFE TVSRAEPETV MEKRSTSSTI SEYLTEAVPG 180 WRVDELLNIP DMASGYSLSD IGSSKAEAGN LGEYDWLADL SLFDEQSYAE TFHEVPQMTP 240 STMPASKLPP AKGKSKLGMA VVPEVDDSLL VPDVSFPAKR RRAWL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002982070.1	0.0	B-box zinc finger protein 25 isoform X1
Refseq	XP_024543018.1	0.0	B-box zinc finger protein 25 isoform X1
TrEMBL	D8SFJ7	0.0	D8SFJ7_SELML; Uncharacterized protein
STRING	EFJ16738	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1804	16	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31380.1	2e-29	salt tolerance homologue

Link Out ? help Back to Top
Phytozome	271535
Entrez Gene	9635208

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]