PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27401.m000280
Common NameRCOM_0005850
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HD-ZIP
Protein Properties Length: 157aa    MW: 17867.9 Da    PI: 9.9127
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27401.m000280genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.11.7e-1986140256
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    rk+ +++k+q  +Lee F+++++++ +++  LAk+lgL  rqV vWFqNrRa+ k
  27401.m000280  86 RKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTK 140
                    788899***********************************************98 PP
2HD-ZIP_I/II99.72.7e-3286155170
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkray 70 
                    +kk+rlsk+q+++LEesF+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+Ek+ +  k+++
  27401.m000280  86 RKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEKKTDGCKKKF 155
                    69***********************************************************999888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046182.1E-21857IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.601.1E-1872136IPR009057Homeodomain-like
SuperFamilySSF466891.8E-1972143IPR009057Homeodomain-like
PROSITE profilePS5007117.39482142IPR001356Homeobox domain
SMARTSM003897.8E-1784146IPR001356Homeobox domain
CDDcd000866.47E-1586143No hitNo description
PfamPF000466.1E-1786140IPR001356Homeobox domain
PRINTSPR000317.7E-6113122IPR000047Helix-turn-helix motif
PROSITE patternPS000270117140IPR017970Homeobox, conserved site
PRINTSPR000317.7E-6122138IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MRSFYPSTDP CRAETRSFLR GIDVNRLPAT ADCEEEAGVS SPNSTISSVS GKRSEREGIN  60
GEEHEHDMER ASSRGISDEE DGDTSRKKLR LSKDQSAILE ESFKEHNTLN PKQKLALAKQ  120
LGLRPRQVEV WFQNRRARTK LKQTEKKTDG CKKKFRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18490SRKKLRL
2134142RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap27401.m000280
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015582260.13e-97homeobox-leucine zipper protein HAT4, partial
SwissprotP466005e-57HAT1_ARATH; Homeobox-leucine zipper protein HAT1
TrEMBLB9SZP41e-111B9SZP4_RICCO; Homeobox protein, putative
STRINGXP_002531463.11e-112(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.12e-47homeobox protein 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Tan W, et al.
    Transcription factor HAT1 is a substrate of SnRK2.3 kinase and negatively regulates ABA synthesis and signaling in Arabidopsis responding to drought.
    PLoS Genet., 2018. 14(4): p. e1007336
    [PMID:29659577]