PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27451.m000248
Common NameLOC8268111, RCOM_0012910
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family GeBP
Protein Properties Length: 286aa    MW: 32508.9 Da    PI: 10.1522
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27451.m000248genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57363.26.2e-2065164397
         DUF573   3 fqrlwseeDeivlLqGlidfkaktgk.....spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                     +r+wse Dei +LqGl+  +++  +     s++       ++ +++ +  ++ksql++K+rrL+kKf+  ++++++g +p++ ++hd+  f+ls+
  27451.m000248  65 LHRIWSEPDEIRFLQGLLRSTSDLSTfydkfSSTTSSPPPQQQQQQHHHHPYTKSQLSQKLRRLRKKFRAISSRISRGLDPNLLSPHDRVLFDLSR 160
                    68*****************9999877665445555666677888899999********************************************** PP

         DUF573  94 kiWg 97 
                    k+W 
  27451.m000248 161 KLWS 164
                    ***7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.1E-2766164IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MDSNLNPLPQ PNLKPQFSTG SSSATKLPIK RKTPNPNSYP LPFTGTIDPD VIPVSTVKPP  60
PPFKLHRIWS EPDEIRFLQG LLRSTSDLST FYDKFSSTTS SPPPQQQQQQ HHHHPYTKSQ  120
LSQKLRRLRK KFRAISSRIS RGLDPNLLSP HDRVLFDLSR KLWSPKDNSK MNSNSGSNIS  180
IEYAERVNLV GVQVDFSPVL PPFNNNNDLQ PLDLDDSNDV DVAAEKASVV AKGVVKVFDE  240
CIKERLRCMA VDDKNDFERK WREQKAAEMD VFGRRLRLLL EGSVRL
Cis-element ? help Back to Top
SourceLink
PlantRegMap27451.m000248
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002531186.10.0probable transcription factor At1g11510
TrEMBLB9SYW70.0B9SYW7_RICCO; Transcription regulator, putative
STRINGXP_002531186.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1654199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.19e-14DNA-binding storekeeper protein-related transcriptional regulator