PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27524.m000294
Common NameLOC8285795, RCOM_0030170
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family CO-like
Protein Properties Length: 468aa    MW: 51861.8 Da    PI: 6.0564
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27524.m000294genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.92.3e-091659340
       zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                   +r C+ + +k+++++C  ++ +lC++C ++ H+       H++v
  27524.m000294 16 ARACDSCVRKRARWYCAADDAFLCQSCDSSVHSAnplarrHERV 59
                   578*****************************667888888876 PP
2CCT67.63.3e-23411454144
            CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                    Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  27524.m000294 411 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 454
                    9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.1491461IPR000315B-box-type zinc finger
SMARTSM003367.0E-111461IPR000315B-box-type zinc finger
PfamPF006436.2E-81659IPR000315B-box-type zinc finger
CDDcd000211.23E-101761No hitNo description
PROSITE profilePS5101716.083411453IPR010402CCT domain
PfamPF062038.1E-18411453IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MISNKNVANA VAGKTARACD SCVRKRARWY CAADDAFLCQ SCDSSVHSAN PLARRHERVR  60
LKISSLKSLD IISKGSSVIT VPSWHQGFTR KARTPRNGHG NKPLLSLLKI EEKSRNPIPL  120
VPEVGSDDQI SHEDNNEEEQ LLYRVPIFDP FVAELCTPTT ISNEADQTTT APFTAGGGNG  180
NDTDQTVAGA NGIESKASYL HGFLPSETDL ADFAADVESL LGRGLENESF GMEDLGLVDC  240
KEEKQFKMQE REFSLASGQV IKLEEEEKEE EEAVRECHID TEIDMAKEPP FELSFDYDSA  300
TCGEEDEKVA TPQRDIKSNN GEYKDNTRSK NDNKKKRKIL LSLDYEAVIT AWATQGTSPW  360
TDGTRRDVDP DECWQDCMGT CGAEFHHPYG DTNGLGGVGG GGNPAMAGGG REARVSRYRE  420
KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF VKRATFAGGP SAFPLHAK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1421437RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMap27524.m000294
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002531628.10.0zinc finger protein CONSTANS-LIKE 6
TrEMBLB9T0590.0B9T059_RICCO; Uncharacterized protein
STRINGXP_002531628.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68520.11e-92B-box type zinc finger protein with CCT domain