PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27538.m000326
Common NameLOC8266269, RCOM_0034600
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family GATA
Protein Properties Length: 323aa    MW: 36280.7 Da    PI: 7.4165
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27538.m000326genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.5e-19237270134
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                    C++C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  27538.m000326 237 CTHCEVTKTPQWREGPMGPKTLCNACGVRYRSGR 270
                    *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.873231267IPR000679Zinc finger, GATA-type
SMARTSM004012.9E-18231281IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.94E-15235294No hitNo description
Gene3DG3DSA:3.30.50.101.0E-14235268IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.35E-15236283No hitNo description
PfamPF003203.4E-17237270IPR000679Zinc finger, GATA-type
PROSITE patternPS003440237262IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MNGSWFFEHN FNGVPDDFFD DALKYLDLPP EDVESNDAIE DWESQFQQLP TPSNILADFT  60
SGICDQISKD SLKLEKSSVS CDESSQPKPW LRAAEAPSSR NIPLNYDPSE GKYSHLFWTS  120
SPVSVLESSS SSSSAENSTV YHPKFAKPVK RPRSKCPRRR RCTFPFLSTS YAPKNNPLGG  180
SESESESESE SESESNPDEK MLNLAKKIQK KKDLMMLSCT VEKKKPSSEV PGEIRKCTHC  240
EVTKTPQWRE GPMGPKTLCN ACGVRYRSGR LFPEYRPAAS PTFVPALHSN SHRKVIEMRK  300
NPRHVGNMAA MDAARLPVPE YSF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap27538.m000326
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002529940.10.0GATA transcription factor 11 isoform X1
RefseqXP_015581321.10.0GATA transcription factor 11 isoform X1
TrEMBLB9SVC10.0B9SVC1_RICCO; GATA transcription factor, putative
STRINGXP_002529940.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57582849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.25e-47GATA transcription factor 11