PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27538.m000327
Common NameLOC8266270, RCOM_0034710
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ARF
Protein Properties Length: 709aa    MW: 77978 Da    PI: 7.6998
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27538.m000327genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.11.6e-23112213199
                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                    f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g+ W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   + ++
  27538.m000327 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVVAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RAES 203
                    89****************************996555555..8************************************************..4489 PP

                    E..EEEEE-S CS
             B3  90 felvvkvfrk 99 
                    + l+v+++r+
  27538.m000327 204 GDLCVGIRRA 213
                    999****997 PP
2Auxin_resp115.83.8e-38279360383
     Auxin_resp   3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+++++FevvY+Prast+eF+vk+++v+++++++++ GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
  27538.m000327 279 ALAANGQPFEVVYYPRASTPEFCVKASSVRASTRIQWCSGMRFKMAFETEDSSRISWfMGTIASVQVADPIRWPNSPWRLLQ 360
                    67899***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-37104215IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.36E-29105216IPR015300DNA-binding pseudobarrel domain
CDDcd100175.71E-21111212No hitNo description
SMARTSM010196.9E-22112214IPR003340B3 DNA binding domain
PROSITE profilePS5086312.929112214IPR003340B3 DNA binding domain
PfamPF023621.0E-21112213IPR003340B3 DNA binding domain
PfamPF065077.0E-33279360IPR010525Auxin response factor
PROSITE profilePS5174517.706596676IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009743Biological Processresponse to carbohydrate
GO:0010154Biological Processfruit development
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0048366Biological Processleaf development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048589Biological Processdevelopmental growth
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MKEVEKRLDP QLWHACAGSM VQIPPINSKV FYFPQGHAEH SQSPVDFSSR IPSLVLCRVA  60
GVKYLADSET DEVYAKISLF PLPSNELDFG DEIGLCDTST NGTNSTEKPT SFAKTLTQSD  120
ANNGGGFSVP RYCAETIFPR LDYSADPPVQ TVVAKDVHGE IWKFRHIYRG TPRRHLLTTG  180
WSTFVNQKKL VAGDSIVFLR AESGDLCVGI RRAKRGIGGG NGPESSPPSG WTTNASCVNP  240
YTGGFSLFLK EDESKGLRNG GGIRGKVRVK AEEVLESAAL AANGQPFEVV YYPRASTPEF  300
CVKASSVRAS TRIQWCSGMR FKMAFETEDS SRISWFMGTI ASVQVADPIR WPNSPWRLLQ  360
VTWDEPDLLQ NVKRVSPWLV ELVSNMPVIH LSPFSPPRKK LRLPQHLDFP LDGQFQLPSF  420
SGNPLGPSSP LCCLSDNTPA GIQGARHAQF GISLSDLQLN KLQSGLFLSS LQRFNSHSRV  480
SESFMKSNTN SNENLSCLLT MGNSNTNSEK SDNVKRHQFV LFGQPILTEQ QISRSCSTDA  540
VSQVLSKKLS SDESPEKAKI HDVLGSTPEK QTSPEKSAST GLSWQSLHTT ETGLDAGHCK  600
VFLESEDVGR TLDLSVLGSY EELYSRLANM FGIERSEMLH HVLYRDAAGA IRQTGDEPFS  660
VFAKTAKRLT ILMNPASSDN IGRPWIRGMR STENGLEASN KADPLSIFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A7e-80838151388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMap27538.m000327
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002529941.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLB9SVC20.0B9SVC2_RICCO; Auxin response factor
STRINGXP_002529941.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]