PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

27657

Common Name

SELMODRAFT_27657

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

LBD

Protein Properties

Length: 109aa MW: 12231.2 Da PI: 7.8318

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
27657	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	110.1	1.7e-34	1	100	3	101
DUF260 3 aaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 aaCk++rr+C+++Cvlapyfp e+++ f ++lFG+sn++++l++ ++ +++d+++sl+ eA+ar+rdPvyG++g+i++l++++++l++el+++ke+l 27657 1 AACKFQRRRCSPECVLAPYFPVENTACFMSCKRLFGVSNMVRILTEGvQPAQKDDTIKSLILEADARQRDPVYGSAGIITTLREEVAKLQEELVVAKEQL 100 8****************************************998669999*****************************************99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.338	1	100	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.2E-34	1	97	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 109 aa Download sequence Send to blast
AACKFQRRRC SPECVLAPYF PVENTACFMS CKRLFGVSNM VRILTEGVQP AQKDDTIKSL 60 ILEADARQRD PVYGSAGIIT TLREEVAKLQ EELVVAKEQL SFLVSQLHQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-28	1	100	13	111	LOB family transfactor Ramosa2.1
5ly0_B	6e-28	1	100	13	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024528143.1	3e-51	putative cyclin-dependent serine/threonine-protein kinase DDB_G0272797/DDB_G0274007
TrEMBL	D8QYQ6	2e-74	D8QYQ6_SELML; Uncharacterized protein (Fragment)
STRING	EFJ34657	3e-75	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23660.2	4e-31	LOB domain-containing protein 10

Link Out ? help Back to Top
Phytozome	27657
Entrez Gene	9655540

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]