PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27744.m000093
Common NameRCOM_0068650
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 376aa    MW: 41810.2 Da    PI: 5.8249
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27744.m000093genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM583.3e-1891412128
            NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpk.....kvka..eekewyfFskrdkkyatgkrknr.atksgyWkatg 87 
                    p+G+rF+Ptd elv +yL +k++g  l+++++ ++++++y   eP +L +     +  +  ++ e+y F+k +kk   g+r  r + + g+W+   
  27744.m000093   9 PVGYRFNPTDCELVGYYLFNKLNGCLLPIDNMlVADTNLYGKdEPLQLWEkfggnC--SfySDGEIYLFTKLKKK---GSRILRsVGAGGTWHGVD 99 
                    89************************999888899999996549****75245542..03367799****99886...678888566699***766 PP

            NAM  88 kdkevlsk..kgel.vglkktLvfykgrapkgektdWvmheyrl 128
                      k+v  k  +g+l  g+kk + +   + ++ +   W+mhe++l
  27744.m000093 100 AGKPVRIKtnRGQLiEGTKKCFSYR--NPNSIHDGCWIMHEFSL 141
                    666666554344443899**99997..566667999******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-247155IPR003441NAC domain
PROSITE profilePS5100527.8078156IPR003441NAC domain
PfamPF023651.6E-159141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MQQLKDQIPV GYRFNPTDCE LVGYYLFNKL NGCLLPIDNM LVADTNLYGK DEPLQLWEKF  60
GGNCSFYSDG EIYLFTKLKK KGSRILRSVG AGGTWHGVDA GKPVRIKTNR GQLIEGTKKC  120
FSYRNPNSIH DGCWIMHEFS LFDISYDWVL CRLKKNFSTD ETGVSDNVPG IKKRVSSKKR  180
KIVHFAGDFN NSEFLTSDER FKVTDVVLAE QALSGFSSNG ASIAVTEQGN EIVVAEFNSE  240
GVISNKSLKA DVIVEEQSNG ASTAVTEQSN QLLGSDDLIE RLINTDLANF TVELKPNLKL  300
WRNLSVPLSR ESNSIERIPV RPKRSIIDFG ASSTLLSDLR TLSPVPGMLD IKGDIPQTGT  360
NSEESPYFSY QDSSSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-14815615170Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap27744.m000093
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015583216.10.0NAC domain-containing protein 41
TrEMBLB9T4760.0B9T476_RICCO; NAC domain-containing protein, putative
STRINGXP_002533045.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.15e-15NAC family protein