PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27749.m000334
Common NameRCOM_0069830
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 246aa    MW: 27942 Da    PI: 10.3954
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27749.m000334genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.5e-1283128454
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    +h+e+Er+RR riN  f+eLr++lP++      K  Ka++L ++++++k+L
  27749.m000334  83 KHKEAERKRRVRINGQFAELRTVLPNL-----IKRKKASVLAETIKCLKDL 128
                    6*************************9.....6899************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.75179128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.79E-982133No hitNo description
PfamPF000104.1E-983128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-1383143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1183137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-885134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048733.21E-4170233No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MMWRNFLQIA ELFSPLFHCS RYHFSPFKIH GVKPISTCYS SGSYSKKINV HSSAANFMDE  60
VNYKNLLATS IPKEEAKLMS ALKHKEAERK RRVRINGQFA ELRTVLPNLI KRKKASVLAE  120
TIKCLKDLVN TLSELKEIYG VGRLSSVFSG GTDMLRVEYS PGQGLKLVKV MLSCEDKRKL  180
MFDIARAVRS VKGKLVKAEI SIMCGWTECV LWVQGINSYQ QLQILKTALG AVIEPKRPNN  240
KPQLCW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18293KHKEAERKRRVR
Cis-element ? help Back to Top
SourceLink
PlantRegMap27749.m000334
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025015163.11e-160transcription factor bHLH131
TrEMBLB9SXH10.0B9SXH1_RICCO; Uncharacterized protein
STRINGXP_002530690.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126113032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.13e-32bHLH family protein