PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27751.m000168
Common NameLOC8258371, RCOM_0071670
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 257aa    MW: 28905.8 Da    PI: 5.3731
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27751.m000168genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-1275127155
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    ++ +hn+ Er RR+++N+ ++ Lr+l P a     kKls  ++  ++ +YI +Lq
  27751.m000168  75 KKLNHNASERDRRKKMNTLYSSLRSLFPAA--DEMKKLSIPATISRVLKYIPELQ 127
                    6789*************************6..48888***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.54174126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-1475148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.36E-1175131No hitNo description
PfamPF000101.2E-975127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-1275140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-780132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MLALSPPVFP TPEWPLEDPL GIDQISYFCR ETQPATAAFL PSYQQELLLL ELDHQQSTSF  60
TAYNSSGGDA NDMVKKLNHN ASERDRRKKM NTLYSSLRSL FPAADEMKKL SIPATISRVL  120
KYIPELQEQL ERLVQRKEEI LLRISKQNHI VNPQINQRKG TSHSSLSVVS ANQISDKEAI  180
IQISTYSNTI HTSPLSEILL LLEEEGLLLI NSSSAESFGG RVFNNLHVQV DDTYTLECDA  240
LSEKLASLYA KRDGLFP
Cis-element ? help Back to Top
SourceLink
PlantRegMap27751.m000168
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002531540.10.0transcription factor ORG2
TrEMBLB9SZX10.0B9SZX1_RICCO; DNA binding protein, putative
STRINGXP_002531540.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24023379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.16e-50bHLH family protein