PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27757.m000022
Common NameRCOM_0074810
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family G2-like
Protein Properties Length: 182aa    MW: 20554.9 Da    PI: 9.3409
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27757.m000022genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1031.8e-3264117255
        G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    prlrWtpeLH +Fv+ave+LGG+++AtPk +l+lm+v+gL+++hvkSHLQ+YR+
  27757.m000022  64 PRLRWTPELHLCFVKAVERLGGQDRATPKLVLQLMNVNGLSIAHVKSHLQMYRS 117
                    8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.68360120IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-3160118IPR009057Homeodomain-like
SuperFamilySSF466898.78E-1662118IPR009057Homeodomain-like
TIGRFAMsTIGR015577.8E-2464119IPR006447Myb domain, plants
PfamPF002492.2E-1065116IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MVGSDQSGCS ETKASRQNQE DESGSGENDG DESMPKNGAS SSNSTVEESD KKPSVRPYVR  60
SKMPRLRWTP ELHLCFVKAV ERLGGQDRAT PKLVLQLMNV NGLSIAHVKS HLQMYRSKKI  120
DDPSQVMADH RHLMKSGDRN IYNLSQLPML QGYHQRHASS YRYGDASWNA RENFVYNSHM  180
GR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-1865119357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-1865119357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-1865119357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-1865119357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap27757.m000022
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002534265.21e-134uncharacterized protein LOC8261789
RefseqXP_025015737.11e-134uncharacterized protein LOC8261789
TrEMBLB9T7P61e-134B9T7P6_RICCO; Uncharacterized protein (Fragment)
STRINGXP_002534265.11e-135(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23783482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.11e-65G2-like family protein