PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27782.m000013
Common NameRCOM_0083040
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 55aa    MW: 6429.55 Da    PI: 10.6251
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27782.m000013genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.54e-102553129
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIar 29
                     +g+W+++Ed++l+d++k +G g+W++ ++
    27782.m000013 25 KGAWSKQEDQKLIDYIKIHGEGCWRSLPK 53
                     79**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-121654IPR009057Homeodomain-like
PROSITE profilePS5129412.9842055IPR017930Myb domain
SuperFamilySSF466891.38E-72053IPR009057Homeodomain-like
PfamPF002494.1E-82553IPR001005SANT/Myb domain
CDDcd001673.63E-52753No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 55 aa     Download sequence    Send to blast
ERKKLTKKAR KKMRKPCCDK EGNNKGAWSK QEDQKLIDYI KIHGEGCWRS LPKAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1614KKARKKMRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap27782.m000013
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346753e-42KM034675.1 Jatropha curcas clone JcMYB055 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002534714.23e-24transcription factor MYB8
RefseqXP_012491251.14e-24PREDICTED: transcription repressor MYB6-like
RefseqXP_016701608.14e-24PREDICTED: transcription repressor MYB6-like
RefseqXP_017629510.14e-24PREDICTED: transcription repressor MYB6-like
SwissprotP813954e-17MYB30_ANTMA; Myb-related protein 330
SwissprotQ388513e-17MYB6_ARATH; Transcription repressor MYB6
TrEMBLB9T8Z52e-31B9T8Z5_RICCO; R2r3-myb transcription factor, putative (Fragment)
STRINGXP_002534714.13e-32(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.11e-18myb domain protein 6
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]