PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27810.m000633
Common NameLOC8278943, RCOM_0088930
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C3H
Protein Properties Length: 725aa    MW: 79423.4 Da    PI: 7.1902
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27810.m000633genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.4e-07304324526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    +C++f++ G C++Gd C +aHg
  27810.m000633 304 PCPDFRK-GACRRGDMCEYAHG 324
                    8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484038.86E-1749167IPR020683Ankyrin repeat-containing domain
CDDcd002041.15E-1586165No hitNo description
SMARTSM002480.003287117IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.204.6E-1887166IPR020683Ankyrin repeat-containing domain
PfamPF127966.6E-1087156IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.987180IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0027122154IPR002110Ankyrin repeat
PROSITE profilePS5008812.636122157IPR002110Ankyrin repeat
PRINTSPR014159.6E-5123138IPR002110Ankyrin repeat
PRINTSPR014159.6E-5141155IPR002110Ankyrin repeat
SMARTSM003564.0E-6299325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-4304326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582304326IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-5304324IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4332362IPR000571Zinc finger, CCCH-type
SMARTSM0035649334357IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MCCELEHWKP TPSPIVPLIS LQESRQTSID MNHLTVETAD TFASLLELAA NNDVEGFKRS  60
IKREPSCVDE VGLWYGRKKG SKQMVNELRT PLMVAATYGS IDVIKLILSL SDADVNRPCG  120
LDNSTALHCA ASGGAVNAGD VVKLLLAAGA DPNLTDANGH RPIDVIVVPP KLRNVKFTLE  180
ELLAIDRAFI GHNLRISTRT SDSNSPPLSP SVENGSPLSS LDSPMKSKLN DGPTASEKKE  240
YPVDPSLPDI KNSIYSTDEF RMYSFKVRPC SRAYSHDWTE CPFVHPGENA RRRDPRKFHY  300
SCVPCPDFRK GACRRGDMCE YAHGVFECWL HPAQYRTRLC KDGTSCARRV CFFAHTVEEL  360
RPLYVSTGSA VPSPRSSTSG ATAMDFAAAM NLLPGSPSSV SVMSPTPFTP PMSPSANSMS  420
HSSVAWPQPN VPALHLPGSN LQSSRLRSSL NARDIPAGDY SMLPDFDVQQ QQLLNELSSL  480
TQPPLSNNSL NRSGRLKILT PSNLDDLFFA ESSSPRYADQ ALASAVFSPS HKSAVLNQFQ  540
QQQSMLSPIN TNFSPKNVDP HLLQASFASG RMSPRNVEPI SPMSSRVSLL AQREKQQQQL  600
RSLSSRELGT NSAAIVGSPV NSWIKWGSSN GKPDWTTSNN EFGKLRRSNS FELGNGEEPD  660
LSWVQSLVKE SPTEMKEKMA MPVSTNGAAS SRESSNVNSQ IESVDHMVGA WIEQFQIDQL  720
VAQQN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17582GRKKGSKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap27810.m000633
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002526717.10.0zinc finger CCCH domain-containing protein 30
RefseqXP_015579398.10.0zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLB9SL480.0B9SL48_RICCO; Nucleic acid binding protein, putative
STRINGXP_002526717.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]