PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27843.m000161
Common NameLOC8280424, RCOM_0098170
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C3H
Protein Properties Length: 295aa    MW: 31031.2 Da    PI: 9.8708
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27843.m000161genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.7e-063558225
                   -S---SGGGGTS--TTTTT-SS-S CS
        zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                   k ++C  f+ t  C++G++C+F H
  27843.m000161 35 KSKPCTKFFSTAGCPFGESCHFLH 58
                   7789******************** PP
2zf-CCCH22.22.5e-07103126427
                    ---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                    + C+ +     Ck+Gd+C+FaHg+
  27843.m000161 103 RMCNKYNTVEGCKFGDKCNFAHGE 126
                    56777777778***********96 PP
3zf-CCCH31.72.6e-10262286126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    +kt+lC +f++ G C +G rC+FaHg
  27843.m000161 262 FKTKLCENFSK-GSCTFGQRCHFAHG 286
                    69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.913360IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.7093361IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-63459IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-43558IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-83558IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-1297129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-798130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.16999127IPR000571Zinc finger, CCCH-type
SMARTSM003560.43101126IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-4113126IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.78E-15158239IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.104.6E-16167237IPR004088K Homology domain, type 1
SMARTSM003227.3E-13167237IPR004087K Homology domain
PROSITE profilePS5008414.676168232IPR004088K Homology domain, type 1
PfamPF000131.5E-11170234IPR004088K Homology domain, type 1
CDDcd001051.87E-14170232No hitNo description
Gene3DG3DSA:4.10.1000.107.9E-15258292IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5261287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-8261291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.685261288IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-8262286IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MMDTRKRGRN DFNANGGFKK SKREMDSLST GVGSKSKPCT KFFSTAGCPF GESCHFLHYV  60
PGGYNAVAQM MNLGPAVTSV PRNMPAPSPA IPNGSAPSAV KSRMCNKYNT VEGCKFGDKC  120
NFAHGEWELG KSMAPSHDDP RAFGTFAGRM GGRMEPPPPG PAASFGASAT AKISVEASLA  180
GAIIGKGGVN SKQICRQTGA KLSIREHETD PNLRNIEFEG SFEQIKQASA MVSELIASIS  240
SVNASAKATG LTGGHGHPGS NFKTKLCENF SKGSCTFGQR CHFAHGAAEL RKSGV
Cis-element ? help Back to Top
SourceLink
PlantRegMap27843.m000161
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002533457.10.0zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-112C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLB9T5D80.0B9T5D8_RICCO; Uncharacterized protein
STRINGXP_002533457.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-57C3H family protein