PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

27914.m000423

Common Name

RCOM_0112340

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

FAR1

Protein Properties

Length: 215aa MW: 24032.2 Da PI: 8.3605

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
27914.m000423	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	92.7	4.5e-29	75	162	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+l+p 27914.m000423 75 FYNAYATRVGFIIRVSKLSRSRRDGTAIGRALVCNKEGFRMPDKRE--KIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLTP 162 ****************************************9988..9************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.3E-26	75	162	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MVGTVEVDCS RTGEENEIGV SSGDGEFQQD EDDKLDIESF NKDTISDVVP SVDVVPADEP 60 YVGQEFESEA AAHAFYNAYA TRVGFIIRVS KLSRSRRDGT AIGRALVCNK EGFRMPDKRE 120 KIVRQRAETR VGCRAMILVR KVSSGKWVVT KFVKEHTHPL TPGKGRRDCI YDQYPKHLKN 180 LKNAKVALGY DSHCYLMHSV FVEKDGVKAK ANKGC

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	27914.m000423

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015580441.1	1e-118	protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_015580442.1	1e-118	protein FAR1-RELATED SEQUENCE 5 isoform X2
Swissprot	Q9SZL8	1e-25	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	B9SR92	1e-158	B9SR92_RICCO; Uncharacterized protein
STRING	XP_002528511.1	1e-159	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2453	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	8e-68	FAR1 family protein

Link Out ? help Back to Top
Phytozome	27914.m000423

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]