PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27940.m000323
Common NameLOC8269035, RCOM_0120660
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family GATA
Protein Properties Length: 542aa    MW: 59967.2 Da    PI: 6.9879
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27940.m000323genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.41.1e-14741135
           GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                   C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  27940.m000323  7 CCHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                   99**************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.7E-9155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.57E-10545No hitNo description
CDDcd002022.11E-15651No hitNo description
PfamPF003202.1E-12741IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-11741IPR013088Zinc finger, NHR/GATA-type
PfamPF139198.7E-12286376IPR028020ASX homology domain
PfamPF165501.3E-8301366IPR032368UCH-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MGKQGPCCHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RADPDDYEDH  60
RVSRVKSISI NKNKDVKLLK RKANHDNGVV GGVVHDYNQG YRKVLDEDIS NRSSSGSAIS  120
NSESCAQFGS ADASDLTGPA QSVVWDSMVP SKKRTCVNRP KQSPVEKLTK DLYTILHEQQ  180
SSCFSGSSEE DLLFESETPM VSVEIGHGSV LIRHPSSIAR DEESEASSLS VENKQCSTNE  240
AYSHSLGLLV HIGNKNIHTP SLLIEKAKNP IGQGLQHEQL KRDKFQHERV QVLGNHNSPL  300
CNVDLNDILN FEEFARYLTN EEQQQLLKYL PPVDTAQLPD SIKSMFDSPQ FKENISCYQQ  360
LLAEGVFDIS FSEAKAEDCN TLKRLTLSNL SKSKWVEHYT QLKKCRNSNE KSLVGRGPTV  420
VSSSNSVSGK RSRDSIGQKY IEVKTMKSPK RISMKATYEN KELMESDGTC FSPRSLFALP  480
PDGGSFMLDS LHCVDESSDQ DLLLDVPSNG SFAQAELLHP ALSFGQQAST SSSSTYPHLL  540
RP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap27940.m000323
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002531215.10.0GATA transcription factor 26
SwissprotQ8W4H11e-164GAT26_ARATH; GATA transcription factor 26
TrEMBLB9SYZ60.0B9SYZ6_RICCO; GATA transcription factor, putative
STRINGXP_002531215.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44243155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-163GATA transcription factor 26