PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27964.m000352
Common NameLOC8266295, RCOM_0130950
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 486aa    MW: 53972.6 Da    PI: 5.9261
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27964.m000352genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.83e-11308353454
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    +h e+Er RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  27964.m000352 308 NHVEAERLRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVCYINEL 353
                    799***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.2E-5325214IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.177304353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-17305369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.56E-12307358No hitNo description
PfamPF000101.3E-8308353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-15308367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-14310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MDELIISPSS SSSLVSFSQG TPPTLQQRLQ FILQSQPDWW AYAIFWQTLN ADNGRIFLAW  60
GDGHFQGTRD TSPNQATINN KHIQSHRISS LNSERKRGMK GIQALIGSDN HDIDVSIMDG  120
SNATDAEWFY VMSLTRSFSA GDGVPGKALS TGSLVWLTGR QDLQFYNCER AKEAQMHGIE  180
TLVCIPTCDG VLELGSSDLI RENWGVVQQA KSLFGSDMMP NNPSPPIHLL DMNISFADIG  240
IIAGVQEGDT TTHANQKPQE NDAKKESNNA ESEHSDSDSS LLAAASLDKK TPKKRGRKPA  300
LGRDTPLNHV EAERLRREKL NHRFYALRAV VPNVSRMDKA SLLSDAVCYI NELKAKIEEL  360
ESQLHRKSSK RVKLEVADNT DNQSTTTSED QAASKPISTV CTTTGFPPEI EVKILANDAM  420
IRVQSENVNY PAARLMTALR DLEFQVHHVS MSTVNELMLQ DVVVRVPDGL RTEEDLKTAI  480
FRRLEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-32192143192Transcription factor MYC3
4rqw_B3e-32192143192Transcription factor MYC3
4rs9_A3e-32192143192Transcription factor MYC3
4yz6_A3e-32192143192Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap27964.m000352
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002529965.10.0transcription factor MYC2
TrEMBLB9SVE60.0B9SVE6_RICCO; DNA binding protein, putative
STRINGXP_002529965.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.16e-85bHLH family protein