PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28008.m000029
Common NameLOC8261026, RCOM_0143290
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family RAV
Protein Properties Length: 349aa    MW: 39697.9 Da    PI: 8.8645
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28008.m000029genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.11.4e-104693154
            AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                   s+++GV  +  +g W ++I+       + +r++lg+f +++eAa a++ a++kl+
  28008.m000029 46 SRFRGVVPHQ-NGHWGCQIYA------NhQRIWLGTFKSEKEAAMAYDSAALKLR 93
                   689***8555.8******999......44**********99************98 PP
2B382.34.7e-26169263183
                    EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                    f+k+ltpsdv+k++rlv+pk+fa ++            gg+k+++ +l ++d+  + W+++++y+k+s++yv+t+GW++Fvk+++Lk++D++ + 
  28008.m000029 169 FQKELTPSDVGKLNRLVIPKRFAIKFfshisesveqniGGNKANDGQLAFYDKAMKLWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTIAIC 263
                    99*********************999************99999999********************************************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.89E-2246104No hitNo description
SuperFamilySSF541717.85E-1646103IPR016177DNA-binding domain
PfamPF008474.1E-64693IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.6E-1847102IPR001471AP2/ERF domain
PROSITE profilePS5103217.00347102IPR001471AP2/ERF domain
SMARTSM003805.9E-2047108IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.1E-30166269IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.8E-25168268IPR015300DNA-binding pseudobarrel domain
CDDcd100171.61E-22168260No hitNo description
SMARTSM010197.7E-18169272IPR003340B3 DNA binding domain
PfamPF023621.3E-23169263IPR003340B3 DNA binding domain
PROSITE profilePS5086312.097169281IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MTGEEIVSMI SNGETAVTEE VSDSNSSTYP ALASKRVMHG SNICTSRFRG VVPHQNGHWG  60
CQIYANHQRI WLGTFKSEKE AAMAYDSAAL KLRSGDCRRN FPITNISVEE PKFQSYYSTE  120
AVLKMIKDGT YQSKLAYFSS TSSQSVETEL SIKLTKTQRN RSLMCKELFQ KELTPSDVGK  180
LNRLVIPKRF AIKFFSHISE SVEQNIGGNK ANDGQLAFYD KAMKLWKFRY CYWKSSQSYV  240
FTRGWNRFVK EKQLKANDTI AICLCECREN AELTDSYYMI DVKNEGDSSS LLESGSQSET  300
TKMQVHLHLG QTTACHYNKN KVEGEGLKEA RPRHDGDRKS FRLFGTEII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-2516526310101DNA-binding protein RAV1
5os9_A4e-25168265796B3 domain-containing transcription factor NGA1
5os9_B4e-25168265796B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap28008.m000029
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002534427.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680 isoform X2
RefseqXP_015583973.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680 isoform X2
TrEMBLB9T8580.0B9T858_RICCO; DNA-binding protein RAV1, putative
STRINGXP_002534427.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.15e-89RAV family protein