PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28011.m000080
Common NameLOC8266392, RCOM_0143840
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 251aa    MW: 29680 Da    PI: 6.7916
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28011.m000080genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM87.82e-2761293128
            NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                     GfrF+Ptdeel+ + L +k+++++++l e+i ++++y+ eP++L+ + + + +++e y+ +kr++ +      + ++ +g Wkat + k++++ +
  28011.m000080   6 HGFRFNPTDEELI-KILDRKASEQEMPL-EFIVHTNLYDQEPQHLEwNdNPSLGNNERYYCCKRENDS------REVAGRGWWKATSHVKKIYV-N 92 
                    7************.88************.99**************85434444778999988887743......347889**************.9 PP

            NAM  97 gelvglkktLvfy.....kgrapkgektdWvmheyrl 128
                      lvg+k+ L+f+     + +++++ kt+W+mhey+l
  28011.m000080  93 VVLVGCKRPLTFHryrdnDRNRKNAIKTNWIMHEYSL 129
                    99***********6665435667778*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100530.4174144IPR003441NAC domain
SuperFamilySSF1019411.57E-325144IPR003441NAC domain
PfamPF023652.3E-176129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MASHVHGFRF NPTDEELIKI LDRKASEQEM PLEFIVHTNL YDQEPQHLEW NDNPSLGNNE  60
RYYCCKREND SREVAGRGWW KATSHVKKIY VNVVLVGCKR PLTFHRYRDN DRNRKNAIKT  120
NWIMHEYSLE SKITEWRLCK IIHKGKPSIH EEMENIRQHF EAAGSSVDSQ LGSERERAQQ  180
ECSPALPAVN STMPSYSQYY WHLQQFPQSP YRIPYHQNLE STGYYFNEQQ GLSLEPSSEE  240
QFGGSLWPWQ N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-18714420165NO APICAL MERISTEM PROTEIN
1ut4_B2e-18714420165NO APICAL MERISTEM PROTEIN
1ut7_A2e-18714420165NO APICAL MERISTEM PROTEIN
1ut7_B2e-18714420165NO APICAL MERISTEM PROTEIN
4dul_A2e-18714420165NAC domain-containing protein 19
4dul_B2e-18714420165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap28011.m000080
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002534118.10.0NAC domain-containing protein 100
TrEMBLB9T7990.0B9T799_RICCO; NAC domain-containing protein, putative
STRINGXP_002534118.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15526612
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.12e-20NAC domain containing protein 100