PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28035.m000366
Common NameRCOM_0147050
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family GATA
Protein Properties Length: 161aa    MW: 17987.9 Da    PI: 9.8442
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28035.m000366genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.32.1e-18111145133
           GATA   1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
                    C+  nC+t +Tp+WR+gp g+ktLCnaCG++yrk+
  28035.m000366 111 CTnyNCNTNDTPMWRKGPLGPKTLCNACGIKYRKE 145
                    55559****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.2E-12105159IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.85E-12108152No hitNo description
PfamPF003205.5E-16111145IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.5E-13114149IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.266115149IPR000679Zinc finger, GATA-type
CDDcd002027.02E-11115144No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MGNIGNNPDI GEQNFNLTDS QIAWLRQNYM NSTNHHRYGG GAEGSVVGIP ISSPNYFNAP  60
IHTMNDYTLL DSTPRRVAHM EDVGGSSSIN FRRRDSRRQR AGSYNDPTKR CTNYNCNTND  120
TPMWRKGPLG PKTLCNACGI KYRKEVEKRR AKEAASSSNG T
Cis-element ? help Back to Top
SourceLink
PlantRegMap28035.m000366
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002528130.21e-118GATA transcription factor 29
TrEMBLB9SQ611e-117B9SQ61_RICCO; Uncharacterized protein
STRINGXP_002528130.11e-118(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF137781622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.14e-19GATA transcription factor 29