PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28049.m000300
Common NameRCOM_0149580
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 299aa    MW: 34299.7 Da    PI: 5.0795
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28049.m000300genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.57.9e-19109158255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr+++ +gr++AeIrdp+    r +r++lg+f+taeeAa  +++a+++++g
  28049.m000300 109 RYRGVRQRP-WGRFAAEIRDPV----RrTRIWLGTFDTAEEAAMVYDKAALQIKG 158
                    8********.**********63....45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.35E-30108165No hitNo description
PfamPF008474.0E-12109158IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-21109166IPR016177DNA-binding domain
PROSITE profilePS5103223.103109166IPR001471AP2/ERF domain
SMARTSM003803.0E-35109172IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-29109166IPR001471AP2/ERF domain
PRINTSPR003671.3E-10110121IPR001471AP2/ERF domain
PRINTSPR003671.3E-10132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEVKPLSVKY TEYKTVTNKL VRANDSKGTR IVRISVTDGD ATDSSSDENE QQQSLNHHHQ  60
RVKKHINEIK LEDCVEYASG KADAKSRNNK QQSRRKITRD EQYYPEGKRY RGVRQRPWGR  120
FAAEIRDPVR RTRIWLGTFD TAEEAAMVYD KAALQIKGPD ALTNFTKPPV RTPTPPPDVD  180
VDVVAVSGYD SGKESHTLSS PTSVLRFQYP EESGNDPHHQ QQQDSVQETK ESDGRRDQKT  240
EQKAWEPIVQ EVKVEDSDDY GSCFEDIPDT LLKDDYLADI SFHLDEDEDL GSCLWDKYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-22106171265ATERF1
3gcc_A1e-22106171265ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap28049.m000300
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015583007.10.0ethylene-responsive transcription factor CRF6
TrEMBLB9T3350.0B9T335_RICCO; Ethylene-responsive transcription factor, putative
STRINGXP_002532654.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61630.13e-43cytokinin response factor 6