PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28117.m000016
Common NameRCOM_0168350
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 122aa    MW: 13633 Da    PI: 4.1738
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28117.m000016genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.51e-101746130
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                     +g+WT+eEd +l++ ++ +G ++WktIa +
    28117.m000016 17 KGAWTAEEDRKLAQFIEVHGAKRWKTIATK 46
                     79**************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.5261255IPR017877Myb-like domain
SuperFamilySSF466896.17E-81346IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-101648IPR009057Homeodomain-like
PfamPF002491.3E-81746IPR001005SANT/Myb domain
CDDcd001671.30E-61944No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MAPKKSSEAS TKIVMNKGAW TAEEDRKLAQ FIEVHGAKRW KTIATKAEEA PEPARPQEAN  60
PQKSNDTAAQ VMEENTEEGL AIPELNFDDT DLFDFSAEGS YGLDWVNKFL ELDEDAWLAD  120
KS
Cis-element ? help Back to Top
SourceLink
PlantRegMap28117.m000016
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015584118.14e-48transcription factor MYB114
TrEMBLB9T9W45e-83B9T9W4_RICCO; Uncharacterized protein
STRINGXP_002535033.18e-84(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3276622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.11e-06myb domain protein 79