PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28118.m000034
Common NameRCOM_0168650
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 215aa    MW: 23573.5 Da    PI: 5.3139
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28118.m000034genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.1e-194191155
            AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   s+y+GVr +k +g+Wv+eIr+p   gk++r++lg+f t+e+Aa a++ a+++++g
  28118.m000034 41 SCYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFETPEMAATAYDVAALYFRG 91
                   79*****999.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.15E-2341100IPR016177DNA-binding domain
PfamPF008474.3E-134191IPR001471AP2/ERF domain
SMARTSM003804.9E-3942105IPR001471AP2/ERF domain
PROSITE profilePS5103223.6574299IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-3242100IPR001471AP2/ERF domain
PRINTSPR003674.9E-104354IPR001471AP2/ERF domain
CDDcd000182.00E-3343101No hitNo description
PRINTSPR003674.9E-106581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MTLSPTSSKP SIICFFLSLL LTEIPLMQEQ TSSNHHGGTS SCYRGVRKRK WGKWVSEIRE  60
PGKKTRIWLG SFETPEMAAT AYDVAALYFR GREAKLNFPH LVHDLPNPAS PNADDIRMAA  120
HEAALRLRSL PIPEREGSNG GGGGGSGGSG SSSSVVGPIT VRLSPREIQA INESPLDSPK  180
MWMQMATMED SMMFANDDGV DDEWDSMQND SLWDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-174399360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap28118.m000034
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002534096.21e-139ethylene-responsive transcription factor ERF021
SwissprotQ9C9I21e-61ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLB9T7771e-158B9T777_RICCO; DNA binding protein, putative
STRINGXP_002534096.11e-158(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.11e-60ERF family protein