PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28140.m000105
Common NameRCOM_0172980
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C3H
Protein Properties Length: 1586aa    MW: 174943 Da    PI: 6.0759
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28140.m000105genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.68e-0715631586226
                     -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHg 26  
                     +++ C+ f+++G+Ck G++C++ H+
  28140.m000105 1563 GQRVCK-FYESGYCKKGASCTYLHP 1586
                     6799**.8899*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579035.32E-8125179IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.4E-9126185IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500168.618130196IPR019787Zinc finger, PHD-finger
SMARTSM002493.7E-7132178IPR001965Zinc finger, PHD-type
CDDcd155681.51E-19132177No hitNo description
PROSITE patternPS013590133193IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF475921.0E-21364442IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.102.1E-26364448IPR003121SWIB/MDM2 domain
PfamPF022014.5E-15370441IPR003121SWIB/MDM2 domain
SMARTSM001512.4E-4375446IPR019835SWIB domain
SMARTSM007194.4E-49505615IPR004343Plus-3 domain
PROSITE profilePS5136022.632505639IPR004343Plus-3 domain
SuperFamilySSF1590429.29E-31506622IPR004343Plus-3 domain
PfamPF031264.5E-24510613IPR004343Plus-3 domain
SuperFamilySSF552771.83E-15835889IPR003169GYF domain
CDDcd000721.72E-14837890No hitNo description
PROSITE profilePS5082914.318837891IPR003169GYF domain
SMARTSM004441.2E-15838893IPR003169GYF domain
Gene3DG3DSA:3.30.1490.408.1E-17839890IPR003169GYF domain
PfamPF022132.4E-12840883IPR003169GYF domain
PROSITE profilePS5010314.90615611586IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.55E-615621585IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-515631586IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-415651585IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1586 aa     Download sequence    Send to blast
MEEQRIQQQQ RRQEQEGGYR PRIQENEQQR LFGNSIQDPE LMTIDQCETM RELDDSQLVG  60
PPPPPSLPPP AAAATAIVNM VDVEVRSAVK AVDVSTVKRK RGRPPRIQGK TTGPPSSQPK  120
RKTTTTDDEE DVCFICFDGG SLVLCDRRGC PKAYHPACIK RDESFFRSKA KWNCGWHICS  180
NCQKASHYMC YTCTYSLCKG CTKDADYVCV RGNKGLCGTC MRTIMLIENV TVGNTEAVQV  240
DFDDKTSWEY LFKIYWIFLK GKLSLTVDEL TKAKNPWKGD ELPKAKNSWR GFGSIFAPKE  300
VHTGELIHGN DEKSPFLDNC YGNVEANHSK RRKTKDQPED LSEQNSVVME KSVVDKVTPL  360
PEGTMWATKE LLEFVSHMRN GDTSMLSQFD VQALLLDYIK RNNLRDPRQK SQIICDSRLK  420
NLFGKPRAGH FEMLKLLEYH FLIKEKSPAN DSVRVGVADA VGSLLEAAGS SDSQMIMGND  480
RRRRTRKKMD ERGPHVNLNP DDYAAIDVHN INLLYLKRNL MENLMDDTEK FHEKVVGSFV  540
RIRISGGDQK QDMYRLVQVV GTSKVAESYK VGSRTTDVML EILNLDKKEV VSIDGISNQE  600
FSEDECRRLR QSIKCGLIKR LKVASHIKDS IIFTNFMCGE IFNLGITRYT KLQECVEKLD  660
LLQSPKERQR RLLDIPTVHV DPNMNPSYES EEDAGQSSEM KQGDHMRLRN TGFGRKGIEL  720
NSPLREGDLN DVGNREHKNL ASVCEQTRNV GTTFYVDRDG TARVHEKVNE SKWRQGGGAF  780
GATNHNISKN QLDIGLGTYD RNSQAVRTES HPGVASAIIP SSLSSGRELS LNDFETEKLW  840
HYQDPFGKVQ GPFAMMQLRK WSTSGLFPPD LRVWRIDKKQ DDSILLTDAL VGECTKVPLN  900
LCNSHLLPQE AAVASNDSEP GFNQTTDASL ADSKRFDHEL KAMHKDETVN ADGDDKPVRS  960
NSLGAHCSTW TKPVDVAIPK DGQVQSSSQQ WELSKGGELY ETPLPQATEG HRDEKWSPHP  1020
CNADGISHKA TDGQTKIGES DEKQGDSEGH SSQSSGQNWR PQPVDSSSSR WDSNTGCVSM  1080
AKSSEKSEQN QEIVVSDLPS PTPKQSHEEL KGQAENKLSV SSSAPVQDSG PSWSTASSLV  1140
VGRQLPEVAG EWGGYSPASA KPSVEEWDSN LVSVSSLKPT EGANDHAATP TSGTDKLTNS  1200
SPPQPELDTS TWQPLVPEPN EFCSLVDESV SDLLAEVEAM ESLGGLPSPT SKMSCGGELT  1260
PGSDNECFSP IEPFSPALDP GKSDALSSTG DIQMPSQLTA ASVLLRLSLT PSQPTVADEP  1320
LAVSQMPSQL TGTTKPHRLS QIQPQSIVPD EPLRVSQLPS RSNLSEEPLG LWHTDALNSQ  1380
KSFSGHSSSS AEVEGDAKPS DSSVNQWDIQ SEIQPLASSI VNQGEAGSDI QASTPSTVSQ  1440
LESGSVTQHR ASSTADTRWG TVKESTNLNQ EGVSQGSTNM VWGTGHGSIQ QQASTTSAIS  1500
TGNIGGWGSQ PRYGGDNRFS GQRDHHRNYF QNRDSGYGRD RSSWNRQPTH GNGGGSFKPP  1560
GKGQRVCKFY ESGYCKKGAS CTYLHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A2e-13120199581Histone-lysine N-methyltransferase NSD3
4gnd_C2e-13120199581Histone-lysine N-methyltransferase NSD3
4gne_A2e-13120199581Histone-lysine N-methyltransferase NSD3
4gnf_A2e-13120199581Histone-lysine N-methyltransferase NSD3
4gng_A2e-13120199581Histone-lysine N-methyltransferase NSD3
4gng_D2e-13120199581Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap28140.m000105
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015583618.10.0zinc finger CCCH domain-containing protein 44
SwissprotQ9SD340.0C3H44_ARATH; Zinc finger CCCH domain-containing protein 44
TrEMBLB9T6E10.0B9T6E1_RICCO; Nuclear receptor binding set domain containing protein 1, nsd, putative
STRINGXP_002533810.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14351523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.10.0DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding