PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28152.m000873
Common NameLOC8267027, RCOM_0174220
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HB-PHD
Protein Properties Length: 896aa    MW: 98443 Da    PI: 4.9901
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28152.m000873genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox421.6e-137207611152
                    HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
       Homeobox  11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                     ++ L + F++n+yp+++++e+LA++lg+t +qV+ WF N R
  28152.m000873 720 VTKGLYRSFKENQYPDRDRKEHLAEELGITYQQVTKWFENAR 761
                    678899**********************************99 PP
2PHD39.11.7e-13356411151
                    SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
            PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                    +C+ Cg+   +++++++lCdg C++ fH++Cl ++l +e++p +   wlC+ C++k
  28152.m000873 356 FCAKCGSkdLTADNDIILCDGaCDRGFHQYCLVPPLLKEDIPPDdqGWLCPGCDCK 411
                    699***977778********66*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.33E-13346414IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.6E-13352411IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.012354411IPR019787Zinc finger, PHD-finger
CDDcd155046.23E-28356408No hitNo description
PfamPF006284.6E-11356411IPR019787Zinc finger, PHD-finger
SMARTSM002491.3E-8356409IPR001965Zinc finger, PHD-type
PROSITE patternPS013590357408IPR019786Zinc finger, PHD-type, conserved site
SMARTSM003891.3E-11709771IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-12710761IPR009057Homeodomain-like
SuperFamilySSF466891.45E-11715766IPR009057Homeodomain-like
PfamPF000468.8E-11720761IPR001356Homeobox domain
CDDcd000862.85E-11724761No hitNo description
PROSITE profilePS5007112.94724767IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 896 aa     Download sequence    Send to blast
MFKADHMGVS SSQASSHTKS YSCPKQSTPE ETPECGDTST VATQSQLSSE GVNKGSLTEN  60
LVPTSEEACK SSLIDTSTSP KTAIDQKLGF VSDDTHIKCG TVSVHNGQSK RNGSLGSGIV  120
QHDSAISTFA VNETLHPLHQ DASKSALGHM EPPPNNEMKV PASEKLGPPH DAEDKHWNGT  180
QSEILSKDAV SNSSRLGRRV KTTAKSRKKY MLRCLRRSDR VMQYRSQEKP KAPESSTNLP  240
NVSSNVEKTR KKKKKRERKS VEADEYSIIR KNLRYLLNRI GYEQSLITAY SAEGWKGLSL  300
EKLKPEKELQ RATSEILRRK SKIRDLFQRI DSLCGEGRFP ESLFDSDGQI SSEDIFCAKC  360
GSKDLTADND IILCDGACDR GFHQYCLVPP LLKEDIPPDD QGWLCPGCDC KVDCIDLLNE  420
SQGTNISISD SWEKVFPEAA APGQNPDQNF GPPSDDSDDN DYDPDIPEID EKSQGDESSS  480
DDSDDSDFTS DELEAPPGDK QQLGLSSEDS GDDDYDPDAP DLDDIVKEES SSSDFTSDSE  540
DLAATLDNNE LSGEDERRIS VGTRGDSTKE GSKRGRKKKQ SLQSELLSIE EPNPSQDGSA  600
PISGKRNVER LDYKKLYDET YGNVSSDSSD DEDFTDDVGA VKRRKSTQAA LGSANGNASV  660
TDTGKQDLKE TEYVPKRSRQ RLISENTSIT PTKAHEGTSP SSSCGKTVRP SGYRRLGETV  720
TKGLYRSFKE NQYPDRDRKE HLAEELGITY QQVTKWFENA RWSFNHSSSM DANRIGKTPE  780
NNSPVSKTTT ILLESAPETV SGAAIDSAAQ REESPKIGDA MVEIYVEDAR ETVLGIPKCC  840
AQNSKTPKSR KRKHNSGDRL SDLESKKEEA KIAPANLPKA QETRVGGRVT RSKSAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249255RKKKKKR
2249256RKKKKKRE
3250258KKKKKRERK
4675680KRSRQR
Cis-element ? help Back to Top
SourceLink
PlantRegMap28152.m000873
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002527467.10.0homeobox protein HAT3.1
RefseqXP_015579878.10.0homeobox protein HAT3.1
TrEMBLB9SN980.0B9SN98_RICCO; Homeobox protein HAT3.1, putative
STRINGXP_002527467.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84373141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.12e-92Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain