PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28152.m000885
Common NameRCOM_0174340
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 239aa    MW: 26173 Da    PI: 9.4194
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28152.m000885genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.60.000521291681054
                    HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    + R +++ ++++ L++l+ +      +K + a++L +A+ YI+ L
  28152.m000885 129 KIRKEKLGERINALQQLVSPF-----GKTDTASVLHEAMGYIRFL 168
                    5677889999********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.24E-5109173No hitNo description
PROSITE profilePS5088811.268119168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-11129186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-8130186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGPSLSFHHP YSSSIKLPKM LSFGGYDNPY LHHHHHHRQK NEVDDGNNVV LLTPQKSGVT  60
CSDSSSASSA NNNSNNSVNV NINTASKSNR KRNGSGQGTA QCSTNPIAKT QRTSKKTKME  120
NPTSTGQPKI RKEKLGERIN ALQQLVSPFG KTDTASVLHE AMGYIRFLHD QVQVLCSPYL  180
QHQPEVEENG EEPRKDLRSR GLCLVPVECT AHVASSNGAD YWSPAMVNNF SSSSSSTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap28152.m000885
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002527479.21e-180transcription factor bHLH113
TrEMBLB9SNB01e-178B9SNB0_RICCO; Transcription factor, putative
STRINGXP_002527479.11e-179(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103212129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.11e-46bHLH family protein