PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28152.m000905
Common NameLOC8272260, RCOM_0174840
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family LBD
Protein Properties Length: 236aa    MW: 25959.6 Da    PI: 8.6613
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28152.m000905genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.52.5e-292100194
         DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                    +C++C++lr++C++dC+l+ ++     p++q++++ +v+k+FG++ ++++++++p ++r+ +++sl+yeA  ra +Pv+Gavg++++++++++q++
  28152.m000905   2 SCNGCRILRKGCSEDCMLRHCLqfidnPQAQANATVFVAKFFGRAGLMSFISSVPYNQRPSLFQSLLYEAVGRAVNPVSGAVGLLWTGNWHVCQKA 97 
                    6*********************************************************************************************98 PP

         DUF260  92 ael 94 
                    + +
  28152.m000905  98 VMT 100
                    765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.5311107IPR004883Lateral organ boundaries, LOB
PfamPF031957.5E-26298IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MSCNGCRILR KGCSEDCMLR HCLQFIDNPQ AQANATVFVA KFFGRAGLMS FISSVPYNQR  60
PSLFQSLLYE AVGRAVNPVS GAVGLLWTGN WHVCQKAVMT VLRGGTVEPL QELFEDGMIL  120
GPAFDNSSEC ASFRPRDNMC SGSKKTTTLK RKMSDDDNDD GAKRGKLTDL DLRLMHSTVE  180
KRRAATPSSE ESETTTLGSG SRSTNCSLQG GGERKLLTLF FKRISLFFLS RDFVSA
Cis-element ? help Back to Top
SourceLink
PlantRegMap28152.m000905
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM1507800.0HM150780.1 Ricinus communis microsatellite RC-107 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002527499.21e-175LOB domain-containing protein 39
SwissprotQ9SZE84e-66LBD39_ARATH; LOB domain-containing protein 39
TrEMBLB9SND01e-174B9SND0_RICCO; LOB domain-containing protein, putative
STRINGXP_002527499.11e-175(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.13e-64LOB domain-containing protein 38