PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28152.m000914
Common NameRCOM_0175330
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 296aa    MW: 31887 Da    PI: 4.7165
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28152.m000914genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.6e-102232631055
                    HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  28152.m000914 223 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 263
                    9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.837213262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-14214277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-12218272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-11219268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.55E-11222267No hitNo description
PfamPF000109.3E-8223263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MEPIGATLEG EWSSLSGMYT HEEADFMAQL LGSCLDSTSG FGVSSSSLWS SHESGMNMAS  60
GVNEGDVTNA ASYLVHGDDC SNQETGNGIA VEESALPDDI LQPKNEEEKP MQEPPAEDKS  120
SNPSEVSKKR SRNADAQKNK RNVRSRKNQK LASSSNDDQK SNAGLNGPAS SSCCSEDESN  180
ASQELNGGAS SSLSSKGDAA LNLNGKTRAS RGAATDPQSI YARKRRERIN ERLRILQNLV  240
PNGTKVDIST MLEEAVHYVK FLQLQIKLLS SDDLWMYAPL AYNGMDIGLD KLTASR
Cis-element ? help Back to Top
SourceLink
PlantRegMap28152.m000914
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025014620.11e-157transcription factor bHLH85
SwissprotQ7XHI94e-71BH084_ARATH; Transcription factor bHLH84
TrEMBLB9SND90.0B9SND9_RICCO; DNA binding protein, putative
STRINGXP_002527508.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.14e-56ROOT HAIR DEFECTIVE 6-LIKE 2