PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28154.m000038
Common NameLOC8259375, RCOM_0176600
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ZF-HD
Protein Properties Length: 245aa    MW: 27559.7 Da    PI: 8.1273
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28154.m000038genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer89.53.2e-283585458
    ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                   v+YkeC+kNhAas+Ggha DGCgEfmp     ++ + l+CaACgCHRnFHRre +
  28154.m000038 35 VKYKECMKNHAASIGGHANDGCGEFMPC----ADDNNLTCAACGCHRNFHRREGT 85
                   89*************************9....45579***************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257747.0E-163589IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047704.3E-243583IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.7E-253683IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.4853783IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466897.96E-19154222IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-29155222IPR009057Homeodomain-like
TIGRFAMsTIGR015651.6E-26162218IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDLTLVPFQQ QREDGDGKHK NRHNPNPISA YFNLVKYKEC MKNHAASIGG HANDGCGEFM  60
PCADDNNLTC AACGCHRNFH RREGTSAASS ARQHHTLHFE HLLLSPPPLA AAKSVTVSKK  120
HLITSHDHSD DPEDDDHDRR SETPERGEVN HVGGLGSRAK NKRFRTKFTQ EQKDRMLEFA  180
EKIGWRINKN DDMALNQFCD EVGVKRNVLK VWMHNNKNAH RRRDVQEEST VGAPPPPAPP  240
QAVGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-251612191775ZF-HD homeobox family protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap28154.m000038
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002534484.10.0zinc-finger homeodomain protein 2
TrEMBLB9T8B50.0B9T8B5_RICCO; Transcription factor, putative
STRINGXP_002534484.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF150921014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.14e-48homeobox protein 22