PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28192.m000250
Common NameLOC8277465, RCOM_0191490
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family RAV
Protein Properties Length: 325aa    MW: 37999 Da    PI: 9.2564
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28192.m000250genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.52.2e-102875154
            AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                   s+++GV   + +g+W A+I        +k ++lg+++ +eeAa a+++a+ kl 
  28192.m000250 28 SKFRGVILLR-SGKWGARIAYK-----YKAYWLGTYDIEEEAAIAYDRAAIKLQ 75
                   7999997666.8******8773.....5**********************9985 PP
2B369.83.8e-22142242184
                    EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                    f k+lt+ dv+  + + +pk++a e+              +g++++s++l+++d++ r W+++++y+k+ ++yv+tkGW++F k n+L+++D+v F
  28192.m000250 142 FRKELTQTDVTHIKGFHIPKDHAIEYfpplvgansgigheNGNNNKSIDLIFYDKHCRPWTFRYSYWKSTQTYVFTKGWRHFLKMNDLRTKDSVFF 237
                    889**********************************99977888*************************************************** PP

                    E...E CS
             B3  83 k...l 84 
                    +   +
  28192.m000250 238 YkceY 242
                    94333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.11E-192884No hitNo description
PfamPF008478.4E-62874IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-152885IPR016177DNA-binding domain
SMARTSM003805.2E-152990IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-152984IPR001471AP2/ERF domain
PROSITE profilePS5103215.832984IPR001471AP2/ERF domain
PRINTSPR003674.6E-53041IPR001471AP2/ERF domain
PRINTSPR003674.6E-56686IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.7E-28138244IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.01E-22140241IPR015300DNA-binding pseudobarrel domain
CDDcd100177.38E-20141238No hitNo description
SMARTSM010199.0E-13142260IPR003340B3 DNA binding domain
PfamPF023625.9E-19142243IPR003340B3 DNA binding domain
PROSITE profilePS5086310.771142260IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MASPNSKMIV SLNQQNESYS SCVRGSSSKF RGVILLRSGK WGARIAYKYK AYWLGTYDIE  60
EEAAIAYDRA AIKLQRSDAP LNFPMPIYTV QETKFQGQYS NEEILDMIKD KTYLSKYANY  120
LANQSLVREF AYEQGITYRM LFRKELTQTD VTHIKGFHIP KDHAIEYFPP LVGANSGIGH  180
ENGNNNKSID LIFYDKHCRP WTFRYSYWKS TQTYVFTKGW RHFLKMNDLR TKDSVFFYKC  240
EYQGKTGGRV FYMIDVLRTS IQSYAVGRNL EKEIGQMKRV ENEEDVDEVM EEEETSNGVK  300
LFGVHISNGK PDHKRKRAHE YQHQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-1614124313106DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap28192.m000250
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002532356.10.0AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLB9T2870.0B9T287_RICCO; DNA-binding protein RAV1, putative
STRINGXP_002532356.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16118910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.17e-50RAV family protein